Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02432 ATGTCAACTTCAGGGGAGGATAAAAAATCCCAATTAAAGCATCGATTCCATCCACATTCTCATTCTCTTTCTCAATCCCTTGCCCATTCCATACTCCCTAACCCACCCTTGACTCAAACATGTGCAATCAGTAGTTTCAACTTCAACAATCATAATCACAATCACACAAGTAATCATCGTCAACTACCTCCTACTTTCTACAATCAAACTCAGCCTCCCATTAGGGCAGAGAATCAAACCACCAGATATACAAAACATGCCACTCACAAACCTAATGCTACTGAAGCTCCTCATTTGGCTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTCTGCTTGATTGAAGCGGCTGACTATGGTACCTTGGATTTAAATAAAAGTGCTGAGACCTTGGAGGTTCAAAAACGAAGAATTTATGATATTACAAATGTTCTCGAAGGAATAGGATTGATAGAGAAGACTTCAAAGAATCATATACGGTGGAAGGGATGTAATGGACATGGAGCCCAAGAACTGGATTATCAACTCAAAAGACTTAAGACTGAAGTTGAAAATCTGTACGCTGAAGAATCTGCACTCGACGATTGTATAAGGCAAAAGCAAGAGCTAATAAAAAACCTGGAGGAAAATGAAAACTCTCAAAGGTACCTTTTCTTGACAAATGAAGATATTCTTAACCTTCCATGCTTCCAGAACCAAGAGCTTATTGCAATCAAGGCTCCAAAATTTAGTGTTGTAGAGGTTCCCGATCCTGATCAGGAGTTAGGTTTCCGGCATTACAAAATGACTGTTAGAAGTGCAACTGGACCAATATATATATATCTATTGAGCAAGAAAGGTCTTAAGTGTAAGAGTGATACTATCGAGCAGGTTAAGCTAATAGATCCATCATGGAATGGTAATCACTGCAAAATGAGGGACATGATATTATCAGCAAGCGAGGCTGATCTAAAAAATCCTGAGGTTTTAACATCCCCGGGCTCAGAGGCATTTGGAATCCAAGAAATTACTCCTATGGAATTTAAAATGGATGATGACTATTGGTTTGAATCAGATGCTGGAGTGACCCTAACAGATTTGTGGGTTAACAATAACTTCTAA 1125 0.3893 MSTSGEDKKSQLKHRFHPHSHSLSQSLAHSILPNPPLTQTCAISSFNFNNHNHNHTSNHRQLPPTFYNQTQPPIRAENQTTRYTKHATHKPNATEAPHLAAVNNCRYDSSLGLLTKKFVCLIEAADYGTLDLNKSAETLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCNGHGAQELDYQLKRLKTEVENLYAEESALDDCIRQKQELIKNLEENENSQRYLFLTNEDILNLPCFQNQELIAIKAPKFSVVEVPDPDQELGFRHYKMTVRSATGPIYIYLLSKKGLKCKSDTIEQVKLIDPSWNGNHCKMRDMILSASEADLKNPEVLTSPGSEAFGIQEITPMEFKMDDDYWFESDAGVTLTDLWVNNNF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02432 374 CDD E2F_DD 183 286 IPR032198 GO:0046983
Aip07g02432 374 Gene3D - 101 173 IPR036388 -
Aip07g02432 374 Gene3D - 177 287 - -
Aip07g02432 374 Pfam E2F/DP family winged-helix DNA-binding domain 108 171 IPR003316 GO:0005667|GO:0006355
Aip07g02432 374 PANTHER TRANSCRIPTION FACTOR E2F 27 371 IPR015633 GO:0000978|GO:0006357
Aip07g02432 374 PANTHER TRANSCRIPTION FACTOR E2FC 27 371 - -
Aip07g02432 374 SUPERFAMILY "Winged helix" DNA-binding domain 106 169 IPR036390 -
Aip07g02432 374 Coils Coil 201 221 - -
Aip07g02432 374 Pfam E2F transcription factor CC-MB domain 187 284 IPR032198 GO:0046983
Aip07g02432 374 SUPERFAMILY E2F-DP heterodimerization region 183 286 IPR037241 -
Aip07g02432 374 Coils Coil 177 197 - -
Aip07g02432 374 SMART E2F_TDP_2 106 171 IPR003316 GO:0005667|GO:0006355
Aip07g02432 374 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02432 Aip-Chr7 102454124 102456622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02432 100 373 E2F-DP Transcription Factor Family AT1G47870 52.727 1.50e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aip07g02432 E2F_CC-MB 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02432 K06620 - gmx:100797301 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02432 07 102454124 102456622 Aip07g02432 07 102454124 102456622 ECH