Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02387 ATGCTCGATTCGGTTCTGTTGGCGCTCTTTCTGCCATGCCTTGGCATGAGCGCAATCTTTACAGTCTACATGTGCCTTCTCTGGTACGCCACCACCCGTCACTCGGCTGACAGGCTACCGGTTAAGCCAGTCTCTGAGAAGGGCCTCTCCTCCTCTGACTTGGAAAAGCTACCGAAAATACCCGGTAAGGAACTGGTCATGGGCTCCGAATGCGCCGTCTGCCTCGATGAGATCGAGAACGAGCAACCGGCTCGCCTGGTTCCTGGTTGCAACCACGGGTTCCATGTTGAATGCGCTGATACCTGGCTCTCCAAGAACCCGCTATGTCCGGGGTCGTTTGTTAGTGACTATGGTAAACGTAGCGCCGAAAGCACTCTTTTCTCTTTTGGGAGGTTGTCGCTTTCACTGATCTTGGAGAGGGTTGAACGTGCGGAGGAGGTTGGCGAGTTTGATCTTATCAAAAGCACAACTAGGTTAAGCGCCGCTGTGAAAAAAGAGCAATTAATTGAGCACTATAAGGATTGGTTTGTGGTGGGGTTTGTTGAAAATGGCTTTATTCATGAAACCAGGACCCAGGCCAGGATCATTGATTGCATGGGATGGCCCTCAAATGGTGAATGGTGGCGCCACGTCACGGATGTGGACAGTTAG 651 0.5177 MLDSVLLALFLPCLGMSAIFTVYMCLLWYATTRHSADRLPVKPVSEKGLSSSDLEKLPKIPGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKNPLCPGSFVSDYGKRSAESTLFSFGRLSLSLILERVERAEEVGEFDLIKSTTRLSAAVKKEQLIEHYKDWFVVGFVENGFIHETRTQARIIDCMGWPSNGEWWRHVTDVDS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02387 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 112 IPR013083 -
Aip07g02387 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 110 - -
Aip07g02387 216 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 110 - -
Aip07g02387 216 Pfam Ring finger domain 70 110 IPR001841 -
Aip07g02387 216 ProSiteProfiles Zinc finger RING-type profile. 71 110 IPR001841 -
Aip07g02387 216 SMART ring_2 71 109 IPR001841 -
Aip07g02387 216 SUPERFAMILY RING/U-box 70 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02387 Aip-Chr7 100318336 100319706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02387 1 110 C3H Transcription Factor Family AT5G42200 54.701 1.68e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02387 K19037 - gmx:100776003 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02387 07 100318336 100319706 Aip07g02387 07 100318336 100319706 ECH
Aip06g00029 06 229461 230326 Aip07g02387 07 100318336 100319706 PCT