LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g02338	ATGAGCTCCTTCCGTGCCGCTCTCGTCGCTGCTTCTTCTCTCCTCGCTGGAGGTTTGCCATCATCTCTTCTCGTCGCTGTTAGTTCAGGAGAAGGTTACGAACCCGTACTAATCCAGAGGAAGAAGAGGATCCTGAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACCAAGACCCTTGACAAGAACATAGGTGCGCAGGAGGTCTTGTTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGAGCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAATGTTGGGTGTGGGAGCCGTGCTTCCTTGTTGTTCTTCTTCTTCTTCTTCTGAGCTCAACCCTGCAATTCGGTCAGAGGTTTCATTTTCTGTTGGGTCTTGCCTCCTTCCTCATCCAGACAAGCTTATTCTTCAATGGTTGACTGGGATATTTGTGCTTATCTATGGTTTTGTTGAGAGAAAGCAGTTTTCTACTGACATCTCCTCCAAGTTGGGAAGTAGTTTCTCTATTGTTCTCTTTGTCATTGTGGTGTCTGTTTGCACCATTCTGACTATGATTGCTACCTTGCCTGTTGCACAGCTTTTCTTCTTTCACATCCTCCTTGTTGAAAAGGGAACTTGGCAGTTGCTTGCTACATCATTAATCTGGCAAAAAGAAAATGATGGAAGCCAATTGAAAAATATTCTGATATTTGTGTACCCTTTTTTGAATCCTCTACAAGTTCATCTTTCTACTCTGACGGAGCAAGAGCAGGAGCAGCAAGGAGTTGGTGGTCAACAAAGTCCTCAAATGTCAACTGTTAGCTCACTTACTGGATTTAGCAGTGCGAGCTCCTTCACTACGTTCCAGCGTGGTTCGTGGTGCACACCACCACACCTGTTCGATGAAGATCAGTGGGATTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAGGAGTCATACAAGATAAACGCAAAGAGATTGAGAAGCTTACTTTACAAAATGGTGGAAAGCGTTGATCTTGGAACCTGCAATTCGGAAAGTGTTACAAGAGATGGTCCCTCCTTGAAGGTCCAGCTGTGTGTCCTGAAGGGTGATTTTGAAAGTGAGGATTGGACTGTTGAGGAATTCAATAGCAACATAGAAAGTCCAAGAGAAAGAAAAGGATCATTACTCAAGGGAGACACGGCTATTATTTTCAAGAATGTTAGCTGCTGCAAAGGCAGCTCAGGAGTCGATTGA	1290	0.4372	MSSFRAALVAASSLLAGGLPSSLLVAVSSGEGYEPVLIQRKKRILKQRLKVPPALNQFTKTLDKNIGAQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEMLGVGAVLPCCSSSSSSELNPAIRSEVSFSVGSCLLPHPDKLILQWLTGIFVLIYGFVERKQFSTDISSKLGSSFSIVLFVIVVSVCTILTMIATLPVAQLFFFHILLVEKGTWQLLATSLIWQKENDGSQLKNILIFVYPFLNPLQVHLSTLTEQEQEQQGVGGQQSPQMSTVSSLTGFSSASSFTTFQRGSWCTPPHLFDEDQWDLNILKKPIVTYEWLKQCSEEHRVVPQESYKINAKRLRSLLYKMVESVDLGTCNSESVTRDGPSLKVQLCVLKGDFESEDWTVEEFNSNIESPRERKGSLLKGDTAIIFKNVSCCKGSSGVD	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g02338	429	Pfam	Calmodulin binding protein-like N-terminal domain	364	418	IPR046831	-
	Aip07g02338	429	ProSiteProfiles	BRCT domain profile.	315	339	IPR001357	-
	Aip07g02338	429	Gene3D	-	34	100	IPR029064	-
	Aip07g02338	429	PANTHER	PROTEIN S-ACYLTRANSFERASE 22-RELATED	143	213	-	-
	Aip07g02338	429	SUPERFAMILY	BRCT domain	312	351	IPR036420	-
	Aip07g02338	429	PANTHER	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	143	213	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g02338	Aip-Chr7	97213313	97217625	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g02338	69	102	SNARE and Associated Proteins	AT5G46860	82.353	1.14e-11	63.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g02338	K20027		-	cit:102624427	158.688