LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g02334	ATGCCTCCACCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAAGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACTCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGACATATTTTGCTATTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGTCGGAGAAGAGAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTGTCAGTGGTACCCAGTCACTGTTTATTACAATTGAGGGTAAAGTTCTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAGCAATCAGGAGGGTTCTTTTATCATTTTTGGTGCAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCCTATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTCACTCCAAGATTTAAAATTAAAGTAACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCTTCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTATATGTGGGGATACTTATCCTCCCATACTCCAAGGGCTCATTGGAAAGTTGCTGCTCAAGGTTGATACCAAATGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTAGGAGAATTTGTGATGATTCCACCATTATTGCGATGTTTGAACTTCCTAATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGAGCATGATTTACACAAATCTGTTCCTCGTGGAAAAGCGGATGTTGGTATTAAGAAGGAGTCTTCTAATAGTTTTATCAAAAGTGAGAAAGATGCTGAAGACAAAACTCCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAATTGGATATATTGCTTAGCTCAGCAGAAAAAGAAACTCAGGAGCTGTTGTCCGATGTTCTTGAAGCACCTTCGCAAAATGGAGAGAAGCTTACCCATGAAAATCATGTTGTCACCTCCAAGGGTAAGAGGAATTTGAATCCTCAATTTGAAGAGGCTGCTGTTGATGCAGATGGGCGTGGGTTCAAGGTTGCCAAGGTTAATGGAGTTTGA	1572	0.388	MPPPFDMISKMHPPREAWKLKVRVLRLWVVLSFGNHEVPNSMEMILLDEHCEKIQATVKKPLLNRFRDHIVEGQVYRMTYFAIVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVVGEEKEYAKEGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGVSGTQSLFITIEGKVLSLEDDFMRLTRKCTIEELQDSNQEGSFIIFGAIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKVTVEDHTGEGIFLLFDREASYLLKKSCADLFTEVQRDASLICGDTYPPILQGLIGKLLLKVDTKCVPHDTFYGTFRVRRICDDSTIIAMFELPNYDADDESTPKKEHDLHKSVPRGKADVGIKKESSNSFIKSEKDAEDKTPSNDTVSDDLSAELDILLSSAEKETQELLSDVLEAPSQNGEKLTHENHVVTSKGKRNLNPQFEEAAVDADGRGFKVAKVNGV	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g02334	523	Gene3D	-	114	226	IPR012340	-
	Aip07g02334	523	MobiDBLite	consensus disorder prediction	479	498	-	-
	Aip07g02334	523	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	22	331	-	-
	Aip07g02334	523	MobiDBLite	consensus disorder prediction	397	449	-	-
	Aip07g02334	523	CDD	RPA1_DBD_A_like	19	107	-	-
	Aip07g02334	523	Pfam	Replication factor-A C terminal domain	252	333	IPR013955	-
	Aip07g02334	523	Pfam	Domain of unknown function DUF223	43	134	IPR003871	-
	Aip07g02334	523	PANTHER	REPLICATION FACTOR A 1, RFA1	22	331	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Aip07g02334	523	MobiDBLite	consensus disorder prediction	397	445	-	-
	Aip07g02334	523	SUPERFAMILY	Nucleic acid-binding proteins	120	213	IPR012340	-
	Aip07g02334	523	SUPERFAMILY	Nucleic acid-binding proteins	233	357	IPR012340	-
	Aip07g02334	523	SUPERFAMILY	Nucleic acid-binding proteins	3	112	IPR012340	-
	Aip07g02334	523	Gene3D	-	4	112	IPR012340	-
	Aip07g02334	523	CDD	RPA1_DBD_C	236	378	IPR013955	-
	Aip07g02334	523	Gene3D	-	227	386	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g02334	Aip-Chr7	97171937	97174826	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g02334	11	330	Core DNA Replication Machinery Family	AT5G08020	22.973	2.39e-13	70.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g02334	-		-	adu:107471135	847.04