Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02315 ATGAGAGATGGTGGAGTGTTATCTTCAGGTACCATGCTGGAACCTACTCCTCCTCCTCCTCCTCCTTCACCACTACCACCACCGCCACCACCTCCTTCAGAGGTAGCAACAACAACAACAACATCAATATTAATGGACTTTGATTACATCAATGAACTCTTTGTAGATGGTTGCTGGTTAGCAGCTTCTTCTTCTTCTGCTGCTGCTGCTGCCGATGGATCTGCTGATTTCTATGTGTCAAGTCCTTCTTTTTCAAACCCCATATTTGATCCTTTCTCTTGGCCTTCCTTGGATACTGAACAAATTGAATCCCAAGAACGAGAACAGGAACATGAACAACAACAAGAACAACCACCTTTTAGCCATGACTTAGTTGTTGCTGCTAATAATTGTAGCCAGAATCAGCAACAACAGTATCATCACTATGAGAATCAGTCAGTGGAAAACAATAATCCAAATCCTAATAATCCTTCTGAGTTTTTCAGAAGGTGGTGGATTGCACCAAGTTCTAATCCGGGACCTGGATCTTATGTAGTTGAGAAGCTATTGAAGGCACTCATGTGTATCAAAGATGTGAACAGAAACAAAGACATGCTTATACAAATATGGATTCCAGTTATAAACAGAGGAGGCACTCAGATTCTCAGAACCAATGGGCTTCCATTCTCACTTGAATCAAGCTCTGTGAACCTTGCAAAGTACAGGGAAATTTCGGAGGTGTACCAGTTCTCCGCCGAGGAGGATTCGAAGGAGTTGGTGCCCGGATTGCCAGGGAGAGTTTACAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTCAGGAGCTATGAATATCCAAGAGTTGACCATGCTCAAGTCTATGATGTGAGAGGATCATTGGCACTTCCAATCTTTGAGCAAGGTAGCAAGAATTGCTTAGGTGTTGTTGAAGTTGTCATGACTCAACAGAAAATCAACTATCGCCCTGAACTTGAAAGTGTTTGCCAAGCACTTGAGGCTGTTAATCTTACAAGCTCAAAACTTCCAACTATTCAGAATGTGAAGCGTACATCATGTGAAAAGTCCTATGAAACTGCATTGCCTGAGATTCAAGAAGTATTAAGATCTGCATGTGAAATTCACAAATTGCCATTGGCACAGACATGGATTCCATGCATCAAACAAGGCAAAGAAGGATGCCGGCACTCGGAAGACAACTATCCACACTGCATATCTCCAGTGGAGCATGCTTGCTATGTTGGTGACCCTTCAATCCAGGTCTTTCATGAGGCATGCTCTGAGCATCACTTGTTAAAAGGCCAAGGTGTTGCCGGCGGAGCATTCATGACGAATCAGCCTTGCTTCGCACCCGACATAACTTTGTTAAGCAAGACAGACTATCCACTTTCTCATCATGCAAGGATGTTTGGATTGCGCGCTGCAGTCGCCATACGCTTGCGAAGCATCTATAATAGTTCAGATGACTTTGTTCTTGAGTTCTTCTTGCCTTTGGAATGCATTGACAATGATGAACAGAAGAAGATGCTCACTTCATTGTCCTTGATCATACAAAGGGTTTGCCATAGCTTGAGGGTTATATCAGATAAGGAAGTGGAGGAGGAAACTGATTTTTCAGCTGAAGTGATAGCTCATGAAGATAGTGGCACTTTTGCTAGTGCTGCAGCGTGGCCAGAACCACTGCAGAGTCAAATTGTTGCTTCATTGGGTGCTCAAGAAAAATCAAGTGAAACTATGGGGACGAGTTTCTCCGACCAAAGGCAACAACAGCAAGAGAGTTCTGTTTTGAAAGGGAACCTTGACTCTAATGGGGAGTGTTCTACTTATAATGTCGGAAACTTGTCAAGTAAAACCGGAGACAAGAAGAAGAGCAAAGTAGATAAGACTATCACTCTGCAAGTTCTTCGCCAACACTTCGCCGGAAGCCTAAAAGATGCAGCAAAGAACATTGGTGTTTGTACTACAACCTTAAAAAGGATCTGCCGGCAACATGGGATAAAACGTTGGCCTTCAAGGAAGATCAAGAAGGTTGGTCATTCCTTGCAGAAGCTTCAACTTGTGATTGACTCAGTCCAAGGTGCTTCTGGTGCATTCCAAATAGATTCCTTCTATTCAAAATTCCCAGACTTAGCTGCTTCTCCAAATCTATCAGGAACAAGCCTGTTCTCAAATCTCAAGCAATGTGATAATAATCCAAACTCACTAAGCATACAGCCGGATCCTGGTTCGCTGAGTCCGGAAGGCGCATCAAAATCGCCGTCCTCTTCTTGCAGCCAGAGCTCGATTTCTAGCCATCCATGTTCCAGCATGGCTGAGCAACAGAATCATCATCACACAAATAATAATTTTGATAGTAGCAAAGATCAAATGGTGTTATTGGTTGGAGAGAATTCTAGCGGCGATGGCTTGTTGAAGAGGATAAGAAGTGAAGCAGAATTGAAAAGCTTGAATGAAGATAGAGCAAAAGTAGTCATGCCAAGATCGCAAAGTCAAGAAACACTTGGTCAACATAACCTTAAAAATGGGCACCATGGATCATTGTCAAGAACCAAAAGCAAAGGGACTCAAAAGGAGGATGCACCTTATAGAGTGAAAGTAACATATGGGGATGAGAAAGCAAGGTTCAAGATGCCAAAGAATTGGGGATATGAAGATCTTGTGCAAGAAGTTGGTAGGAGATTCTGCATAAGTGACATGAACAAATTTGATCTCAAATATTTGGATGATGATTATGAATGGGTGCTACTAACCTGTGATGATGATTTAGAAGAATGCATTGAAGTTTGTCAATCATCTGAGAGCACCACCATCAAGCTTTGTCTTCAATTCTCTAATACTAATCATAGTATGCGAAACCCTTTAGAATTTAGATAG 2877 0.4244 MRDGGVLSSGTMLEPTPPPPPPSPLPPPPPPPSEVATTTTTSILMDFDYINELFVDGCWLAASSSSAAAAADGSADFYVSSPSFSNPIFDPFSWPSLDTEQIESQEREQEHEQQQEQPPFSHDLVVAANNCSQNQQQQYHHYENQSVENNNPNPNNPSEFFRRWWIAPSSNPGPGSYVVEKLLKALMCIKDVNRNKDMLIQIWIPVINRGGTQILRTNGLPFSLESSSVNLAKYREISEVYQFSAEEDSKELVPGLPGRVYKEKVPEWTPDVRFFRSYEYPRVDHAQVYDVRGSLALPIFEQGSKNCLGVVEVVMTQQKINYRPELESVCQALEAVNLTSSKLPTIQNVKRTSCEKSYETALPEIQEVLRSACEIHKLPLAQTWIPCIKQGKEGCRHSEDNYPHCISPVEHACYVGDPSIQVFHEACSEHHLLKGQGVAGGAFMTNQPCFAPDITLLSKTDYPLSHHARMFGLRAAVAIRLRSIYNSSDDFVLEFFLPLECIDNDEQKKMLTSLSLIIQRVCHSLRVISDKEVEEETDFSAEVIAHEDSGTFASAAAWPEPLQSQIVASLGAQEKSSETMGTSFSDQRQQQQESSVLKGNLDSNGECSTYNVGNLSSKTGDKKKSKVDKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLAASPNLSGTSLFSNLKQCDNNPNSLSIQPDPGSLSPEGASKSPSSSCSQSSISSHPCSSMAEQQNHHHTNNNFDSSKDQMVLLVGENSSGDGLLKRIRSEAELKSLNEDRAKVVMPRSQSQETLGQHNLKNGHHGSLSRTKSKGTQKEDAPYRVKVTYGDEKARFKMPKNWGYEDLVQEVGRRFCISDMNKFDLKYLDDDYEWVLLTCDDDLEECIEVCQSSESTTIKLCLQFSNTNHSMRNPLEFR 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02315 958 Pfam RWP-RK domain 630 678 IPR003035 -
Aip07g02315 958 ProSiteProfiles PB1 domain profile. 862 945 IPR000270 GO:0005515
Aip07g02315 958 MobiDBLite consensus disorder prediction 732 785 - -
Aip07g02315 958 PANTHER PROTEIN NLP8 42 948 IPR045012 GO:0003700
Aip07g02315 958 SUPERFAMILY CAD & PB1 domains 856 945 - -
Aip07g02315 958 CDD PB1_NLP 864 943 IPR034891 -
Aip07g02315 958 MobiDBLite consensus disorder prediction 1 37 - -
Aip07g02315 958 MobiDBLite consensus disorder prediction 13 35 - -
Aip07g02315 958 Gene3D - 863 944 - -
Aip07g02315 958 MobiDBLite consensus disorder prediction 99 118 - -
Aip07g02315 958 MobiDBLite consensus disorder prediction 825 850 - -
Aip07g02315 958 MobiDBLite consensus disorder prediction 819 860 - -
Aip07g02315 958 ProSiteProfiles RWP-RK domain profile. 617 698 IPR003035 -
Aip07g02315 958 Pfam PB1 domain 863 943 IPR000270 GO:0005515
Aip07g02315 958 PANTHER PROTEIN NLP4 42 948 - -
Aip07g02315 958 SMART PB1_new 862 945 IPR000270 GO:0005515
Aip07g02315 958 Coils Coil 97 117 - -
Aip07g02315 958 MobiDBLite consensus disorder prediction 577 602 - -
Aip07g02315 958 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02315 Aip-Chr7 96225661 96229262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02315 45 943 NLP Transcription Factor Family AT4G35270 41.892 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip07g02315 PB1 1.1e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02315 - - ahf:112705709 1714.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02315 07 96225661 96229262 Aip07g02315 07 96225661 96229262 ECH