Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02288 ATGAATTTGTTTTTTATTCTTTGTCCGTTGTTGTTGTTGTTGTTCTTCCCCTTTTTGGGAGTATCTGCTGCTGCAAATGTCTCGTCCTCAAGACCTTCTGTCGCGAACATTGGGGCGATCTTCACCTTCAATTCCACAATTGGGAGAGTGGCTAAAATTGCCATGGAGCAAGCAGTGAAGGATGTCAATGCCAACACCAGCATCCTTCATGGAACAAAGCTTGTCCTCCAAATGCAAGATTCCAATTGTAGTGGTTTCATGGGCATGGTTCAATCTTTGCGGTTCATGGAGACTGATGTAGCTGCTATAATAGGTCCCCAATCTTCTGTTGTAGCTCACATCATATCCCATGTTGCGAATGAGCTTCGAGTTCCTCTGGTGTCGTTTGCTGCCACAGATCCTACTCTTACCTCCCTGCAGTTCCCATTCTTTGTGAGGACAACACAGAGTGATCTGTATCAAATGACTGCGGTTGCGGAGATCATAGACTATTATGGTTGGAAGGAGGTGATTGCCATCTATTTAGATGATGATTATGGACGAAATGGTGTTTCTGTGTTGGATGATCAGCTGGCTGCTCGGCGCTGCAAAATATCCTACAAGGCTGCAATCAAATCTGGATCAGTTGACCGGGGAGAGATCACGAATTTGCTTGTGCAAGTGGCTCTGATGCAATCTCGGATCATTGTTCTTCATACAAATCCTGATTCTGGATTTATGGTCTTCAATGTGGCGCATTATCTTGGGATGACAACCAATGGCTATGTCTGGATAGCCACGGATTGGCTCTCATCTGTCTTGGATTCTACTTCTCTACCTTCAGAAACAATGGATATTCTTCAAGGAGTACTTGTTTTGCGCCAACATACACCCGATTCTGATAGAAAGAAATCATTTATCTCTACATGGAACAAGTTAACTGGCGGCTCTTTGGGGCTACATTCCTATGGTCTCTATGCTTATGATTCTGTCTTTCTGTTAGCGCACGCTCTCGATGCATTCTTTAGTCAGGGTGGGATTGTTTCGTGTACCAACTACACGAGTTTGCGCGATGATAAGCCTGGTGGTCTGAACCTTGATGCTATGAGCATTTTTGACAATGGAACACTTCTGCTGAAGAACATAGAGCAAAGTGATTTTCTTGGATTAACAGGTCATGTGAAATTTGCACCAGACAGATGCCTTGTTCGTCCTGCATATGATGTTATCAATGTGGTTGGAACTGGCATTCATCGGGTAGGTTACTGGTCGAACTATTCTGGTCTCTCAATTGTGCCTCCAGAGACATTGTATGCTAAGCCGGCTAATAAATCAAGTGCAAACCAGCACCTTCATAGTGTCATATGGCCTGGAGATACATTATCAAAACCCCGTGGATGGGTTTTCCCAAATAATGGAAGGCAATTGAGAATTGGTGTGCCTGTTCGAGTTGGTTTCCGCGAATTTGTTTCGCGGGTGCAGGGGACTGATATGTTTAAAGGTTTCTCTATTGATGTATTCACTGCAGCTGTGAACTTGTTACCATATGCTGTTCCATACCACTTTGTCCCATTTGGAAATGGCCGCGAGAATCCAAGCTACACAGAACTTGTCAATTTAATCACCACAGGTTACTTTGACGGTGCTGTTGGTGACATTGCCATCATCACGAATCGGACAAAGATCGTAGATTTCACACAGCCATATGCTGCATCTGGACTAGTTGTGGTGGCCCCTTTTAAGAAAATCAATTCTGGAGGATGGTCTTTCCTTCGGCCATTCACACCATTTATGTGGACTGTGACTGCTTGTTTCTTCTTTTTCATTGGAATAGTTGTATGGGTTCTGGAACACAGAATCAATGATGAGTTCAGAGGCCCACCAAAACAACAATTCATAACAATTTTATGGTTTAGCCTTTCAACTCTCTTCTTTTCCCATAGAGAGAATACCATGAGCACTCTCGGTAGATTGGTGGTTCTGATCTGGCTGTTTGTAGTGTTGATCATAAACTCCAGCTACACTGCAAGTTTAACATCCATACTCACTGTGCAGCAGCTATCTTCCCCTATCAGTGGAATCGATAGCTTAAAGAATAGTAATGAACGCATAGGATTCCAAGTGGGTTCATTCGCGGAGCACTATTTGGTTGAGGACATCGGGATATCCGAAAATAGACTCGTTCGCCTAGGATCTCCAGATGCATATGCTAAGGCACTCCAACTTGGTTCTAAGAATGGAGGTGTTGGTGCCATTGTTGATGAAAGACCATACATTGAAATCTTCTTATCAACACAATGCACATTCAAAATTGTAGGCCAGGAGTTCACCCGAAGTGGCTGGGGTTTTGCATTCCCTCGCGACTCCCCATTAGCCGTGGATTTGTCAACTGCTATTCTACAACTTTCGGAAACAGGGGATCTGCAGCGGATTCATGATAAGTGGATGACAAGAAGCAGCTGTAGTTTAGATAATGCCGAGATTGATTCGGATAGGCTTCAGTTGAAAAGCTTCTGGGGACTGTTCCTCCTTTGTGGGATGGCTTGCTTCATAGCTCTTGTCATACATTTTGTGCAAATTATGGTGCGGATGTGGCATGCACCTCCTCCTGAAGCTGCATCTAATGGTAGCTCCATTTCTGGTCGTTTTCAAAGGTTTCTGTCACTGATTGATGAGAAGGAAGAGTCACCAAGGAATAATTGGTTGAAACAAATCAGAGTCCCAAGAGGACGAAGAAAAGAAGACATCAATGACGATGATGTTTTGCTAGATGGCAAAGAAAACGAGCCCTTTCCGTCTACCTCATCTGCTGCCCTCGCCGTCACCATTACTGTTCCCTCCTTCGTCATCCCCAACGACAAAAAGGCTCTAATTTCAACTGCCACTGCCAACGTGGCCACAACCGTGGTTGTTGCTCTCGAAGGCATCTCCTCTGATCTAAAACGGAAGCAGCAAATTGAGGAGAAGAAATCGCTCGATGATTCATGGAGGCTATTCCAGTGGCTGTGGACTGACGAAGATGAGATCGAGCTTCTACAAGGGTTTTGA 3027 0.444 MNLFFILCPLLLLLFFPFLGVSAAANVSSSRPSVANIGAIFTFNSTIGRVAKIAMEQAVKDVNANTSILHGTKLVLQMQDSNCSGFMGMVQSLRFMETDVAAIIGPQSSVVAHIISHVANELRVPLVSFAATDPTLTSLQFPFFVRTTQSDLYQMTAVAEIIDYYGWKEVIAIYLDDDYGRNGVSVLDDQLAARRCKISYKAAIKSGSVDRGEITNLLVQVALMQSRIIVLHTNPDSGFMVFNVAHYLGMTTNGYVWIATDWLSSVLDSTSLPSETMDILQGVLVLRQHTPDSDRKKSFISTWNKLTGGSLGLHSYGLYAYDSVFLLAHALDAFFSQGGIVSCTNYTSLRDDKPGGLNLDAMSIFDNGTLLLKNIEQSDFLGLTGHVKFAPDRCLVRPAYDVINVVGTGIHRVGYWSNYSGLSIVPPETLYAKPANKSSANQHLHSVIWPGDTLSKPRGWVFPNNGRQLRIGVPVRVGFREFVSRVQGTDMFKGFSIDVFTAAVNLLPYAVPYHFVPFGNGRENPSYTELVNLITTGYFDGAVGDIAIITNRTKIVDFTQPYAASGLVVVAPFKKINSGGWSFLRPFTPFMWTVTACFFFFIGIVVWVLEHRINDEFRGPPKQQFITILWFSLSTLFFSHRENTMSTLGRLVVLIWLFVVLIINSSYTASLTSILTVQQLSSPISGIDSLKNSNERIGFQVGSFAEHYLVEDIGISENRLVRLGSPDAYAKALQLGSKNGGVGAIVDERPYIEIFLSTQCTFKIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLQLKSFWGLFLLCGMACFIALVIHFVQIMVRMWHAPPPEAASNGSSISGRFQRFLSLIDEKEESPRNNWLKQIRVPRGRRKEDINDDDVLLDGKENEPFPSTSSAALAVTITVPSFVIPNDKKALISTATANVATTVVVALEGISSDLKRKQQIEEKKSLDDSWRLFQWLWTDEDEIELLQGF 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02288 1008 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 916 - -
Aip07g02288 1008 Gene3D - 464 577 - -
Aip07g02288 1008 SMART GluR_14 470 811 IPR001320 GO:0015276|GO:0016020
Aip07g02288 1008 CDD PBP1_GABAb_receptor_plant 36 426 IPR044440 -
Aip07g02288 1008 Gene3D - 578 711 - -
Aip07g02288 1008 Gene3D - 53 397 - -
Aip07g02288 1008 Gene3D - 756 815 - -
Aip07g02288 1008 Gene3D - 150 422 - -
Aip07g02288 1008 PIRSF IGluLR_plant 3 933 IPR017103 -
Aip07g02288 1008 Pfam Bacterial extracellular solute-binding proteins, family 3 489 810 IPR001638 -
Aip07g02288 1008 CDD GluR_Plant 467 808 - -
Aip07g02288 1008 Pfam Receptor family ligand binding region 52 407 IPR001828 -
Aip07g02288 1008 SUPERFAMILY Periplasmic binding protein-like II 445 811 - -
Aip07g02288 1008 SUPERFAMILY Periplasmic binding protein-like I 30 461 IPR028082 -
Aip07g02288 1008 PANTHER GLUTAMATE RECEPTOR 3.3 22 916 - -
Aip07g02288 1008 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02288 Aip-Chr7 95689124 95694193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02288 10 898 Ion Channels AT1G42540 63.596 0.0 1224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02288 K05387 - gmx:102661260 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02288 07 95689124 95694193 Aip07g02288 07 95689124 95694193 ECH