Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02245 ATGGAGGATGGCCCCGAGCGGCTAGTTGATAACTCTCATGGAAATTTAGAAATGGAGGTTGTTGAAGATGACGATGCCGCTTTGCAGCGCCAGCACCATTCAGAAAAGGATCAGAATGTGGATTCCAACTCCCCTGCTCAGCTCCAACAGGATCATGTCATGTTCGATCGGCAAAGTGATGACAACAAGAATGCCAATTCTGCTCTTCTTTCTGTGCTAGAGACCAAGACGGATAGTAGTAACACGCGCCTTGAGAATCGCCTTCAAGATCCTAAAGTCCATTCGCACCATGAATTACTCACTCCGAAGCCTAAAGAGAGGAATGTTAGGGAAATGAAAAACGTGCTCCATGATACTGAGATGACTGATTATGATGAGTCTGGTTCGTATTCCGAACGAGAAGCATTTATGAGAGAGCTGGAGAGTTTCTATAGAGAGAGATCCTTGGAGTTCAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTCAAGTTATGGAGAGCTGTCATCAAACTTGGTGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCATCCACCCAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGTATAAGAGAGAAATTGGGGAGCTACAGCTCCCTGTTGGATCATTTCATCAATCTTCAAGTGTGGAAAAAGAGACTGCTGTTTACCAGGCTCCAGGCTCTGGCTCTGGTAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCCCAGCGCCTACTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGATAAGAACTCCAATTCTACTCCGAAACGAGAAAAGAACCTCAAAAGTATTGGTATGCTAAATAAACACAGGACACCATCTGTTCTTGAGCATGCTGGGAAAGCTGCAAATATTGAAGGAGATAGACAATTGGTCACGGCAGTTGTAGATGTTGGACCCCCAGCAGACTGGGTGAAGGTCAATGTGCGAGAAACTGTAAGTCGGTTTCCTTTTTTATTCTCTCCCTTCTGA 1086 0.4558 MEDGPERLVDNSHGNLEMEVVEDDDAALQRQHHSEKDQNVDSNSPAQLQQDHVMFDRQSDDNKNANSALLSVLETKTDSSNTRLENRLQDPKVHSHHELLTPKPKERNVREMKNVLHDTEMTDYDESGSYSEREAFMRELESFYRERSLEFKPPKFYGEPLNCLKLWRAVIKLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKREIGELQLPVGSFHQSSSVEKETAVYQAPGSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNSNSTPKREKNLKSIGMLNKHRTPSVLEHAGKAANIEGDRQLVTAVVDVGPPADWVKVNVRETVSRFPFLFSPF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02245 361 SUPERFAMILY ARID-like 120 228 IPR036431 GO:0003677
Aip07g02245 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 29 351 - -
Aip07g02245 361 MobiDBLite consensus disorder prediction 60 79 - -
Aip07g02245 361 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 29 351 IPR045147 GO:0006357
Aip07g02245 361 SMART ARID_2 127 217 - -
Aip07g02245 361 ProSiteProfiles ARID domain profile. 130 221 IPR001606 GO:0003677
Aip07g02245 361 MobiDBLite consensus disorder prediction 24 39 - -
Aip07g02245 361 MobiDBLite consensus disorder prediction 24 103 - -
Aip07g02245 361 Gene3D - 130 228 IPR036431 GO:0003677
Aip07g02245 361 Pfam ARID/BRIGHT DNA binding domain 132 217 IPR001606 GO:0003677
Aip07g02245 361 SMART bright_3 131 222 IPR001606 GO:0003677
Aip07g02245 361 MobiDBLite consensus disorder prediction 80 103 - -
Aip07g02245 361 CDD ARID 132 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02245 Aip-Chr7 92534539 92538654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02245 101 354 ARID Transcription Factor Family AT1G76510 62.016 7.19e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip07g02245 ARID 3.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02245 - - adu:107461292 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02245 07 92534539 92538654 Aip07g02245 07 92534539 92538654 ECH