Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02194 ATGGTCATCATCATCATCATCAGAATTTTTTCCAAAATCAACCAAAAGTCCAAGCTGAACAAAAACCCACCACCACCACCACTATTATCATCATGGTCATCATCATCAAAAGCAATAGAAAAAGCGGCTGACAGTGTCGTAACATTCTCAACAATTTCAACGTTTGGTGTGATCGGTACGTTGTGGGTGCGGATTGCATCCTCTGATCCAAGAGACTGGTATAGAATACAACTTGGTCTCTTGGGAGTTGGGTTTGTCCATATGAAGCCCGCTACCACCAACATGGCTCAGCCGCAGAGTAATTGGGAGGCTGATAAAATGCTTGATGTTTACATCCATGATTATTTTGTAAAGAGAAAATTACATAACACTGCAAAAGCTTTTATGACAGAAGGCAAAGTTTCCACCGATCCTGTAGCAATTGACGCTCCTGGAGGATTTCTGTACGAGTGGTGGTCTGTCTTTTGGGATGTCTTCATCTCAAGGACAAACGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAATGAAGGCTAGAGAACAACAACTTCAGATGCAACAATTGCAACTTATGCAGCAGCGCGGTGCACAGCTGCAACGACGGGATCCTAATCATCCTCCTCTAGGTGGTTCCTTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCAACCAACAAATGTGTTGGCCATGAAAATGTATGAAGACCGAATGAAACACTCTCATTCAATGGAGTCAGAGGCATCTCCAACACTTATCGATGCAAATAGGATGGCCCTTCTTAAATCTGGAACAAGTCATCAAGGTCAGTTGGTCCATGGTAATTCAGGAAATATGTCTACTGCATTGCAGCAACTTCAGGCCCGGACTCCTTTGACAACTGACATCAAAGGAGAAGTCAATTTAGGTGCCACTCCCAAGAGTTTGCCTATGGATAACTCCGTGTACAGACAAGCAATTTTACAATCAAAATCCGGGCTAGGCGGCACAGGGTTAAATCCAGGGGTTACAAGTCTTCCACTAAAGGGGTGGCCCTTAACTGGTATTGATCAACTAAGACCTGGTGGCTTGGGCGTACAAGTTCAGAAGCCTAATTTGACAACTCAAAGCCAATTTCTTTTGGCATCACAACAGCAGCAAGTCTTAGCACAATCTCAGGCACAAAACAACCTTGGAAGTTCTAATAGTCAAGGTGATATGGATCCACATAGACTTTCTACTGTCCCTCGAGGTGGCTTAAGTGCAAAAGATGGTCAATCTACCAGCTCCCAAGTGCAGTCAGGTTCACCTAAGGTTGAATTTGCTCTTCAAATATTAATGTGCCTGAATAACAACCGAAAAAGGAAACAACATTCTTCTTCTGGACCCGGCAATAGCACTGGTACTGGAAACACAGTAGGTCCTTCACCTAATTCACCACCATCAACTCACACACCTGGTGATGGAATAAATACAGCAAGCAGCATGCAGCATGTTAACAGTATGCCAAAGAGTATGATGATGTATGGTACAGAAGCAACGGGTGGCCTTGCATCGTCTTCTAATTTGCTTGAGGATATGGACCGATTTGGAGATGTTGGTACTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGAAGGTAGTCTCTATGGAAGTATAAAACAAAATCCGGCTGAGCAACAAAAGGAACCATCAAAAGGTAGTCTTTTACGACTGATTCGCTTGTGTATTAAAGTATCATTGACCAAATTTTGCATTTCAGGTTTCACCTTTGCTGAATTTGGTTGCATACGAACAAGGAACAGCAAAGTTACTTGCTGTCATTTTTCATCTGATGGAAAATTGCTTGCCAGTGCTGGACATGACAACAAGGTTGTCCTTTGGAACATGGACACTTTACAGACAGAGAGCACTCCAGAAGAACACAAGTTGGTTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCAACAGCCTCAATCGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATACGGTGGGCACAGTGCAGCAATTATGTCTCTTGATTTCCACCCAAAGAAGACTGATATGTTCTGCTTTTGTGATAGTGAAAATGCAATTCGGTACTATGATATTACTTCATCCTCCTGCACACATGTATTGAAGGGTGGAAATGCTCAAGTGCGGTTTCAGCCTAGAGTGGGGCAAGTACTAGCAGCAGCTTCTGACAAAGTAGTGTCAATTTTTGATGTTGAAACCGACAGACAAATTTATTCACTTCAGGGACACTCTGAAGCGGTGAACTATATTTGCTGGGATGCAACTGGAGATTTCTTGGCAACTGTGAGTCAAAATTTGGTGAAGATTTGGACACTGGCCTCTGGAGAATGCATTCAGGAGCTTAGCTCAAATGCAAACCAGTTCCATTCTTGTGTCTTTCATCCAAGCTATTCAACTTTGTTGGTGATTGGAGGGTTTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTTCTGCACACGAGAATATAATTTCCGCTTTGGCTCAATCTCCTGTAACTGGAATGGTCGCCTCTGCAAGTCATGACTGCTCTGTTAAGTTATGGAAATAA 2643 0.4302 MVIIIIIRIFSKINQKSKLNKNPPPPPLLSSWSSSSKAIEKAADSVVTFSTISTFGVIGTLWVRIASSDPRDWYRIQLGLLGVGFVHMKPATTNMAQPQSNWEADKMLDVYIHDYFVKRKLHNTAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQMKAREQQLQMQQLQLMQQRGAQLQRRDPNHPPLGGSLNAMNSEGMLGQQPTNVLAMKMYEDRMKHSHSMESEASPTLIDANRMALLKSGTSHQGQLVHGNSGNMSTALQQLQARTPLTTDIKGEVNLGATPKSLPMDNSVYRQAILQSKSGLGGTGLNPGVTSLPLKGWPLTGIDQLRPGGLGVQVQKPNLTTQSQFLLASQQQQVLAQSQAQNNLGSSNSQGDMDPHRLSTVPRGGLSAKDGQSTSSQVQSGSPKVEFALQILMCLNNNRKRKQHSSSGPGNSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHVNSMPKSMMMYGTEATGGLASSSNLLEDMDRFGDVGTLEDNVESFLSNDGGDEGSLYGSIKQNPAEQQKEPSKGSLLRLIRLCIKVSLTKFCISGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDNKVVLWNMDTLQTESTPEEHKLVISDVRFRPNSSQLATASIDKSVRLWDAANPSYCVQEYGGHSAAIMSLDFHPKKTDMFCFCDSENAIRYYDITSSSCTHVLKGGNAQVRFQPRVGQVLAAASDKVVSIFDVETDRQIYSLQGHSEAVNYICWDATGDFLATVSQNLVKIWTLASGECIQELSSNANQFHSCVFHPSYSTLLVIGGFSSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02194 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 673 IPR001680 GO:0005515
Aip07g02194 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 848 880 - -
Aip07g02194 880 MobiDBLite consensus disorder prediction 544 566 - -
Aip07g02194 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 848 880 IPR001680 GO:0005515
Aip07g02194 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 634 - -
Aip07g02194 880 SUPERFAMILY WD40 repeat-like 597 880 IPR036322 GO:0005515
Aip07g02194 880 MobiDBLite consensus disorder prediction 417 433 - -
Aip07g02194 880 MobiDBLite consensus disorder prediction 451 493 - -
Aip07g02194 880 MobiDBLite consensus disorder prediction 388 433 - -
Aip07g02194 880 Coils Coil 175 195 - -
Aip07g02194 880 ProSiteProfiles LIS1 homology (LisH) motif profile. 104 136 IPR006594 GO:0005515
Aip07g02194 880 CDD WD40 603 880 - -
Aip07g02194 880 SMART WD40_4 592 631 IPR001680 GO:0005515
Aip07g02194 880 SMART WD40_4 677 717 IPR001680 GO:0005515
Aip07g02194 880 SMART WD40_4 720 756 IPR001680 GO:0005515
Aip07g02194 880 SMART WD40_4 800 839 IPR001680 GO:0005515
Aip07g02194 880 SMART WD40_4 759 797 IPR001680 GO:0005515
Aip07g02194 880 SMART WD40_4 634 673 IPR001680 GO:0005515
Aip07g02194 880 SMART WD40_4 841 880 IPR001680 GO:0005515
Aip07g02194 880 Gene3D - 733 880 IPR015943 GO:0005515
Aip07g02194 880 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 640 IPR001680 GO:0005515
Aip07g02194 880 MobiDBLite consensus disorder prediction 388 406 - -
Aip07g02194 880 Gene3D - 598 732 IPR015943 GO:0005515
Aip07g02194 880 Pfam LisH 106 132 IPR006594 GO:0005515
Aip07g02194 880 Pfam WD domain, G-beta repeat 604 631 IPR001680 GO:0005515
Aip07g02194 880 Pfam WD domain, G-beta repeat 762 796 IPR001680 GO:0005515
Aip07g02194 880 Pfam WD domain, G-beta repeat 844 880 IPR001680 GO:0005515
Aip07g02194 880 Pfam WD domain, G-beta repeat 640 673 IPR001680 GO:0005515
Aip07g02194 880 SMART Lish 104 136 IPR006594 GO:0005515
Aip07g02194 880 PRINTS G protein beta WD-40 repeat signature 660 674 IPR020472 -
Aip07g02194 880 PRINTS G protein beta WD-40 repeat signature 867 880 IPR020472 -
Aip07g02194 880 PRINTS G protein beta WD-40 repeat signature 618 632 IPR020472 -
Aip07g02194 880 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 99 880 - -
Aip07g02194 880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 673 - -
Aip07g02194 880 ProSitePatterns Trp-Asp (WD) repeats signature. 618 632 IPR019775 -
Aip07g02194 880 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 99 880 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02194 Aip-Chr7 85565392 85575970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02194 617 865 U-box Gene Family AT2G33340 28.682 2.01e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aip07g02194 WD40 0.0069 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02194 - - qsu:111995984 1139.41