Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02154 ATGAAGCTTTCTTCAGCTGATTTTTGTCCTCCACCCCCGGAAGTTGCAGGAGGCATAGCTAGAAAGATGGAAAGGGCTTCCTGTTGTGACAAGGTGGGACTCAAGAAAGGCCGCTGGACAAAAGAGGAGGATCAAATCTTGATAAACTACATTCAAGCCAATGGAAAAGGTTCTTGGAGGGCTTTGCCTAAGAATGCTGATTTAGCATATGGGACAAGTCAAGCATAG 228 0.4561 MKLSSADFCPPPPEVAGGIARKMERASCCDKVGLKKGRWTKEEDQILINYIQANGKGSWRALPKNADLAYGTSQA 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02154 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 75 IPR017930 -
Aip07g02154 75 SUPERFAMILY Homeodomain-like 31 65 IPR009057 -
Aip07g02154 75 Gene3D - 33 69 - -
Aip07g02154 75 ProSiteProfiles Myb-like domain profile. 31 75 IPR001005 -
Aip07g02154 75 CDD SANT 38 65 IPR001005 -
Aip07g02154 75 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 24 68 - -
Aip07g02154 75 PANTHER MYB TRANSCRIPTION FACTOR 24 68 - -
Aip07g02154 75 Pfam Myb-like DNA-binding domain 36 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02154 Aip-Chr7 74531396 74533133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02154 23 68 MYB Transcription Factor Family AT2G47460 76.087 6.18e-20 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip07g02154 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02154 K09422 - jre:108991418 86.2705