LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g02146	ATGGGCTCTGTAACAATGGGCTCTGTAACAACCATTTGCAGTGATAAGACTAGCACGTTGACCATGAATCAGATGACTGTGGTGGAGGCTTATGCTGGTGGGAAGAAGAATGATCCTCCTGGTAACAAGTCAGAGCTCTCTCCCAAGCTCCACTCTTTGCTCATTGAAGGTGTTGCACAGAACAATAATGGCAGTGTTTCTGTCCCTGAGGGTGGTAACGATGTTGAGGTTTCCGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTAGAGATTGGGATGAACTTCGACTCTACTAGATCGGAATCATCAATTATTCACGCTGACTCTGAAGTTCACATACACTGGAAAGGTGCTGCTGAGATTGTCCTAGCCTGCTATACACGGTACATTGATGCAAATGACCTGTTGATGGTATCTTTCAGAAAAGCTATTGAAGACATGGCTGCCGAGAGTTTACGTTGTGTTGCCATTGCATATAGAACATTTGAAAAGGAGAATGTTCCAGCCACTGAAGAAGAACGGGCTCACTGGTCTTTACCAGAAGATAATCTTGTTTTGTTAGCTATTGATCCTTGTCGACCTGGAGTCAAAGATTCAGTGGAGCTTTGCCAAAAATCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTGGAGTGTGGAATACTTAATTCCCTTGCTGAAGCTACAGAGCCAATCATCATTGAAGGAAAAACTTTTCGTGCCATGACAGATGCACAGAGAGATGAAATAGCTGAAGCAATATTAGTTATGGGGTCATCTCCTAATGACAAATTATTGCTTGTGCAAGCATTGAGGAGGAAGGGACATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTACATGAGGCTGATATAGGTCTTGCAATGGGTATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCTGATATTATTTTGGATGGCAATTTTGCTTCAGTTGTAAAGGTTGGACCTATTTCTTTTCGATTTGAGAGATCTACATTGGCAACTGATCCACCAACTGATCACCTTATGGATTGGCCTCCAGTGGGCCGAAGAGAACCTCTCATAACAAATATTATGTGGAGAAATTTGCTGATACAGGCGAGTTTTGTTTCTCATTTCTCAGCAATGTACCAAGTATCTGTGTTGCTTGTTCTGAATTTCCGAGGTAGGAGCATACTGGGTCTGACACATGACAAAAATGATCATGCAATTAAAGTGAAAAACACTCTGATCTTCAATATTGGTGGTTGTGCTGTAATGATCTTTAATGAGTTCAATGCACGAAAGCCAGATGAGTTTAACATATTCAGTGGAGTCACGAAAAACTACCTGTTGTGCTTCAGATCATCATCATCGAATTCCTCGGCAAGTTCACTTCAACAGTCAGGCTTAATTGGAAGCAGTGGCTGA	1458	0.4211	MGSVTMGSVTTICSDKTSTLTMNQMTVVEAYAGGKKNDPPGNKSELSPKLHSLLIEGVAQNNNGSVSVPEGGNDVEVSGSPTEKAILHWGLEIGMNFDSTRSESSIIHADSEVHIHWKGAAEIVLACYTRYIDANDLLMVSFRKAIEDMAAESLRCVAIAYRTFEKENVPATEEERAHWSLPEDNLVLLAIDPCRPGVKDSVELCQKSGVKVKMVTGDNVKTAKAIAVECGILNSLAEATEPIIIEGKTFRAMTDAQRDEIAEAILVMGSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIILDGNFASVVKVGPISFRFERSTLATDPPTDHLMDWPPVGRREPLITNIMWRNLLIQASFVSHFSAMYQVSVLLVLNFRGRSILGLTHDKNDHAIKVKNTLIFNIGGCAVMIFNEFNARKPDEFNIFSGVTKNYLLCFRSSSSNSSASSLQQSGLIGSSG	485

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g02146	485	Gene3D	-	23	189	IPR023299	GO:0000166
	Aip07g02146	485	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	20	191	IPR023299	GO:0000166
	Aip07g02146	485	Pfam	Cation transporting ATPase, C-terminus	348	462	IPR006068	-
	Aip07g02146	485	SUPERFAMILY	HAD-like	11	340	IPR036412	-
	Aip07g02146	485	PANTHER	CALCIUM-TRANSPORTING ATPASE	5	337	-	-
	Aip07g02146	485	PANTHER	CALCIUM-TRANSPORTING ATPASE	348	461	-	-
	Aip07g02146	485	PANTHER	CATION TRANSPORTING ATPASE	5	337	-	-
	Aip07g02146	485	PANTHER	CATION TRANSPORTING ATPASE	348	461	-	-
	Aip07g02146	485	SUPERFAMILY	Calcium ATPase, transmembrane domain M	348	464	IPR023298	-
	Aip07g02146	485	PRINTS	H+-transporting ATPase (proton pump) signature	142	160	IPR001757	GO:0005215\|GO:0005524\|GO:0016021\|GO:0016887

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g02146	Aip-Chr7	72610220	72616097	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g02146	5	461	Primary Pumps ATPases	AT5G57110	58.519	0.0	579

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g02146	K01537		-	gmx:100820121	644.039

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