LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g02113	ATGGTTTATTCCACCGTGAAGCACCTCAAAACGGGTCACAGTGCGTCGCTTCAGTGCACTGTGTGCTTGAGCGAGTTCAAGGACATGGACAAGCTCAGACTTTTGCCAAAGTGCAGTCACGTGTTTCACCCCGAGTGCATCGACGCGTGGCTCGCCTCGCACGTGACTTGTCCTGTCTGCAGGGCCAAGATGAAGTCGGAAAACATGGAGTTCAAGGTGGAGATTCAGGAGTTAGAGGGAAGTGCCAACCATATGTTCGATGAAATGTCTGAGAGAATGGGTGAGGTTTCTTGTGATGGGAACGAAGGTGGGGTTGGTGAGGGAGATGATGGGGTTTTTGGGGAGTGTCATGGGACCTCAAAGGTGAGAGCTTTTGGGTTGTTGGTGAGTTCCCACTCTACGGGTCACTCTCTTGTGGAACCGGGGAAGAGCTTGGAGTGGTTCACTTTGCGATTGCCTGAGGAATTGAGGAAGCAGATTCTGGAAGCCAATCATAAGTGTAGTGGTGGTAGTGGTGGGATGAAGCGTTCGACAAGCTACGACGTCGTTTTGCAGAGTGAAGTTGGTGAAGGTAGTAGTAGTAATAAGGGGAGTAAGAATAGTAGGTGGGTGTTGTCTATGACACCTCCGTTTGTTTCTCGCAGTTGGGGTCATTTTAGTACTTCTTTTAGTTTGGCACCGTCAAATGAGTGCTCAACATGCTCTGGGATTCCTAGGCTTTGGGGTTCTTCAGCGGCAAGGGAAGAGAAAGGATGTGAAGGGAGAGAGGGTTTGCAACTGGTATGA	786	0.5	MVYSTVKHLKTGHSASLQCTVCLSEFKDMDKLRLLPKCSHVFHPECIDAWLASHVTCPVCRAKMKSENMEFKVEIQELEGSANHMFDEMSERMGEVSCDGNEGGVGEGDDGVFGECHGTSKVRAFGLLVSSHSTGHSLVEPGKSLEWFTLRLPEELRKQILEANHKCSGGSGGMKRSTSYDVVLQSEVGEGSSSNKGSKNSRWVLSMTPPFVSRSWGHFSTSFSLAPSNECSTCSGIPRLWGSSAAREEKGCEGREGLQLV	261

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g02113	261	Coils	Coil	61	81	-	-
	Aip07g02113	261	Pfam	Ring finger domain	18	61	IPR001841	-
	Aip07g02113	261	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE	1	182	-	-
	Aip07g02113	261	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	3	71	IPR013083	-
	Aip07g02113	261	SMART	ring_2	19	60	IPR001841	-
	Aip07g02113	261	CDD	RING-H2_EL5_like	18	61	-	-
	Aip07g02113	261	PANTHER	RING FINGER DOMAIN-CONTAINING	1	182	-	-
	Aip07g02113	261	ProSiteProfiles	Zinc finger RING-type profile.	19	61	IPR001841	-
	Aip07g02113	261	SUPERFAMILY	RING/U-box	16	65	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g02113	Aip-Chr7	68960552	68961337	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g02113	1	215	Rapid Response to Elicitors	AT3G05200	34.764	4.33e-34	125

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g02113	K10664		-	aip:107636030	178.718

Showing 1 to 1 of 1 entries