Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02071 ATGGAGTCGGAGGAATCCCGGTCCCAGTTACCGGGAGACGAAGCAACAGCGGTTGAGGGAACCGCTGAGCAACTGGTGGCGAGGGCCATAGCTCCCATCAAGAAGGAATTCCTTCGCCCACCACCTGTTCGCTCTTCCTCCGCAGACAACGAAGCCGCTGCCGCCGCCGCCGCCACCAATGATAATAAGAACCCTGCTCATCCTGGTTCGGGTCTTCTAAAGGACAAGAAGTCCAAGCGCCAGCTCAAGCGTGAACGCCGTCAGGAGCAAAAGTCGGCACGAAACCTCTGCCCGGAAGTTGCAAAGACCGGTGATGTTACTTCATGTCCTTATAAAGACAAATGCCGCTTCAGCCATGATATTGAAGCCTTCAAGGCCCAGAAACCAGCTGATCTAGAAGGACAATGTCCTTTTGTTAAGTCTGGAGGGCCTTGCCCTTATGGGTTAGCATGTAGATTTTCAAGTACCCATGAAGATGGTGTTCCTTCTTCTACTGGCCATCTCAACGGTCTTAAGAACCCTTCTGAGGTTAATGGATTGAGCAAAGATGTTCAGAAGCTTCTGTGGAAAAATAAGATGAGGTTCTCCAAGGCTGATGCCAAACTCAAAAGTCTTGGCCTCTTGGGCCCCAAGTCAAAAATGAAGAACTTGGAAAATAAAGATGGTGAAAATGGCGGTTCAAATAAGTGTAGCCTTTCTGATGACAATGGGTGTTGTGAAGTAGCCTCTGACTTGGGTCCTAAGTTGGAAGAAGCTATAAAGGATGATGATGCTGATGCAAAATATGAAACCGATGAACTTTGTCCACAGAAAAGAAGAAAAACTGGAGTAAATTGTGATCCTAGTGAGATAGAAAAAGTCAATGTAACTTTTTTCCATACTGCTGAAACAGGTGTGAATGTTACTGAAGAAATTGAAAGAGGCAGCATAAATACTGAACCAGAAGCAGGATGTGATACTTTAACCATAAAAACTGATCTAAGTCTGAAGTTACATCCACGTGAAAAGAAGCTTATTGATTTTAGGGACAAATTGTATCTTGCACCCTTGACCACAGTTGGAAACCTCCCTTTTAGGAGGGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAGATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCTGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGTGCATATCCAGATACTGTGGCTCGCACTGTTGAACTAATAGAACAAGAATGTACCATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTGACAAAACCAATGCGGATGAAAAATATTGTTGAAGTAGCTTCAAGCACAGTGGACAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGAAAGAATCGCATTGATTCTCTCATTGCAGACATGGGCTCTTGGGGAGCTGGCTCAGTAACAATACATGGAAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGATTGGGATTACATATACCAGTGTGGAAGGAAGGCCCCTAAGACATTGCCAGTAGTGGGGAATGGGGATGTTTTTTCGTTTGTAGACTGGAATAACCACAGAACTGCATGTCCTGAACTTGCTACCTGCATGGTTGCTCGTGGTGCTCTGATTAAACCTTGGATATTTACTGAGATCAGGGAACAGAGACATTGGGACATCAGTTCTGGTGAGCGACTAAATATTCTCAAAGAGTTTGTGCATTTTGGCCTTGAACACTGGGGATCTGACACAAAAGGAGTGGAGACAACGAGGAGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTACGTACCTGTTGGTCTTCTGGAAGTGATTCCACAACGAATAAACTGGCGTCCACCTTCTTACTATGGGCGAGACGAGCTTGAGACGCTGATGGCCTCAGACTCGGCAGCTGACTGGATACGCATATCAGAGATGCTACTAGGCAAGccgttgcttgctccgtcgccgctcctggaggctggaggtgggtggccgagcctctgccgccggataacgccactgccgccatcgagatccactgccgtcgccatcgccggagtctggttgccgctgccgcttgaggtggctgccggggctgccgccaaactggttcagagaccgccgctgcttcgtttcgtattacaggaactgtttatgctgttgcgaaagtgtgcgaggctgtga 2259 0.4024 MESEESRSQLPGDEATAVEGTAEQLVARAIAPIKKEFLRPPPVRSSSADNEAAAAAAATNDNKNPAHPGSGLLKDKKSKRQLKRERRQEQKSARNLCPEVAKTGDVTSCPYKDKCRFSHDIEAFKAQKPADLEGQCPFVKSGGPCPYGLACRFSSTHEDGVPSSTGHLNGLKNPSEVNGLSKDVQKLLWKNKMRFSKADAKLKSLGLLGPKSKMKNLENKDGENGGSNKCSLSDDNGCCEVASDLGPKLEEAIKDDDADAKYETDELCPQKRRKTGVNCDPSEIEKVNVTFFHTAETGVNVTEEIERGSINTEPEAGCDTLTIKTDLSLKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVEVASSTVDKPITIKVRTAYFEGKNRIDSLIADMGSWGAGSVTIHGRSRQQRYSKLADWDYIYQCGRKAPKTLPVVGNGDVFSFVDWNNHRTACPELATCMVARGALIKPWIFTEIREQRHWDISSGERLNILKEFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYVPVGLLEVIPQRINWRPPSYYGRDELETLMASDSAADWIRISEMLLGKPLLAPSPLLEAGGGWPSLCRRITPLPPSRSTAVAIAGVWLPLPLEVAAGAAAKLVQRPPLLRFVLQELFMLLRKCARL 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02071 752 ProSiteProfiles Zinc finger C3H1-type profile. 91 122 IPR000571 GO:0046872
Aip07g02071 752 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 25 675 - -
Aip07g02071 752 SUPERFAMILY FMN-linked oxidoreductases 344 657 - -
Aip07g02071 752 ProSitePatterns Uncharacterized protein family UPF0034 signature. 428 446 IPR018517 GO:0008033|GO:0017150|GO:0050660
Aip07g02071 752 Gene3D - 86 164 - -
Aip07g02071 752 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 25 675 - -
Aip07g02071 752 CDD DUS_like_FMN 344 579 IPR035587 -
Aip07g02071 752 MobiDBLite consensus disorder prediction 1 96 - -
Aip07g02071 752 Gene3D Aldolase class I 340 582 IPR013785 -
Aip07g02071 752 Pfam Dihydrouridine synthase (Dus) 347 583 IPR035587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02071 Aip-Chr7 65708730 65714430 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip07g02071 Dus 5.3e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02071 K05544 - gmx:100783494 1032.32