Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02063 ATGTTCCGTTACGACCTCCTCGACGAGATGCAGAACAAGCTCGATTACATCCTCTCTCTCACCGTCGAGAACTTCCTTGAACGTCGCCTCCATATTCTCGTCTTCAAGTCTGATGCTCCCGGAGCACCTAGGCAGTGGTGGTTTGGCGGGGGGATTGACTTGACTCCTTACATTTTCGAGGAGGATGTTAAACACTTTCATTCGGTTGGTAAATTTTTCTCTTCAGCACAAAACAATGCTGTAGCTCAACAGAGGGAGCATGATGTCCAAACAACTGTTAAAGGGTCGATTGACAGCCCATTATTACTAGAACAATGGTCTTGTTCCGAGAGAAAGAATATTGTTTCAAGAAAGACCACATTTGTGAAGAGACATCTTACTGGTGAATTCGAGAAGAAATATGAACCAACCATTGGTGTGGAGGTCCACCTATTGGATTTTTTCACAAACTGCGGGAAGATTCGTTTATATTGCTGGGATACTGCTGGCCAAGAGAAGTTTGGTGGTTTAAGAGATGGATATTATATCCATGGGCAATGTGCGATCATAATGTTTGATGTCACTGCTCGATTGACTTATAAAAATGTCCCTACTTGGCACCGTGATCTTTGCCGATATTTAAATGAACTTTGTTAA 636 0.4277 MFRYDLLDEMQNKLDYILSLTVENFLERRLHILVFKSDAPGAPRQWWFGGGIDLTPYIFEEDVKHFHSVGKFFSSAQNNAVAQQREHDVQTTVKGSIDSPLLLEQWSCSERKNIVSRKTTFVKRHLTGEFEKKYEPTIGVEVHLLDFFTNCGKIRLYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRYLNELC 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02063 211 Pfam Coproporphyrinogen III oxidase 35 73 IPR001260 GO:0004109|GO:0006779
Aip07g02063 211 SMART rab_sub_5 118 211 - -
Aip07g02063 211 SMART ran_sub_2 116 210 - -
Aip07g02063 211 ProSiteProfiles small GTPase Ran family profile. 77 211 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip07g02063 211 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 166 184 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip07g02063 211 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 119 133 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip07g02063 211 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 186 207 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip07g02063 211 Pfam Ras family 118 208 IPR001806 GO:0003924|GO:0005525
Aip07g02063 211 Gene3D - 116 211 IPR027417 -
Aip07g02063 211 PANTHER RAN GTPASE 117 207 IPR002041 GO:0003924|GO:0005525|GO:0006913
Aip07g02063 211 PANTHER GTP-BINDING NUCLEAR PROTEIN 117 207 - -
Aip07g02063 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 207 IPR027417 -
Aip07g02063 211 ProSiteProfiles small GTPase Rab1 family profile. 96 211 - -
Aip07g02063 211 Gene3D Coproporphyrinogen III oxidase, aerobic 28 98 IPR036406 GO:0004109|GO:0006779
Aip07g02063 211 SUPERFAMILY Coproporphyrinogen III oxidase 37 77 IPR036406 GO:0004109|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02063 Aip-Chr7 64922570 64924692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02063 1 37 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 78.378 1.60e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02063 K07936 - mus:103970000 191.045