Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02050 ATGGCGACAACAGCGCTCAATCGCGGTGCATTCCTCCATGTACAGTGGCAGCGCGATGCTCTCCTCAACGAGCGCGGTACTCAATCGCGGGAAACCCCCTCCCCCTTCTCTTCTACATCTCGTTCTTACTCTGTTCCTCTATTTCTAGAGAATTTGCCAGAGGATCATTCAAAAGATAACCTTCAGCGAATATTCTGGGAAGCTGGAAAGGTTTTGACTGAGAGCGATGGGGAGAGGAAGATCGCGATAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCAAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTCGAGTTATGATCTCTTCCATCACTAACTCTATGATTTCTCCGGTTCCAGTTGACTGCATTGACTGTGCTACTAATGCATCAGTGGTTAGCGCTCTGAACGAAGGAATTTTAGCTGCAACAGAAATGGCAGGTCTTCAGAAAAAGCCTTGGGTTATGATCAATGTCAATGATGATAAAGATCTTCATATTCGCAAAGCCGAATTTGATCCAGAAGACTGTCCAGCAAATTGTTCTCGCCCTTGCAAAATTGTGTGCCCTGCTAATGCAATATCATTCCTAGGGAAATCAGCATCTGGAACTTCATTTAATACGGAATTACCCAAAGTGTTAATGGATGGAGTCATAACAGAACGCTGCTATGGTTGTGGCCGTTGCCTTCCGGTTTGCCCCTATGACAAAATAATGGGTGCTAATTTTCCAGAAAGTGCAGCCGGAGAGCATCGAGTTCAAGAACATCGAGAAAATGAAGAGCAAGGCATGCGTAATATTCTGAATGACTATATTCTTATCTACAGAAGAATGGGGGTAGAGGCAGAGAAACTGCATATTATTGATAAGGATTGCATTGAAAAAGGAATTGTAGAACTTATCTGCAAGCATAATATCAAGAAGCTTGTGATGGGAGCAGCTTCTAATAAGTACCATTCTAGGTAA 1008 0.4425 MATTALNRGAFLHVQWQRDALLNERGTQSRETPSPFSSTSRSYSVPLFLENLPEDHSKDNLQRIFWEAGKVLTESDGERKIAIRRIDNSTSRQVTFSKQRNGLLKKAKELAILCDAEVRVMISSITNSMISPVPVDCIDCATNASVVSALNEGILAATEMAGLQKKPWVMINVNDDKDLHIRKAEFDPEDCPANCSRPCKIVCPANAISFLGKSASGTSFNTELPKVLMDGVITERCYGCGRCLPVCPYDKIMGANFPESAAGEHRVQEHRENEEQGMRNILNDYILIYRRMGVEAEKLHIIDKDCIEKGIVELICKHNIKKLVMGAASNKYHSR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02050 335 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 182 213 IPR017896 -
Aip07g02050 335 PRINTS MADS domain signature 98 113 IPR002100 GO:0003677|GO:0046983
Aip07g02050 335 PRINTS MADS domain signature 78 98 IPR002100 GO:0003677|GO:0046983
Aip07g02050 335 PRINTS MADS domain signature 113 134 IPR002100 GO:0003677|GO:0046983
Aip07g02050 335 ProSiteProfiles MADS-box domain profile. 76 129 IPR002100 GO:0003677|GO:0046983
Aip07g02050 335 SMART madsneu2 76 135 IPR002100 GO:0003677|GO:0046983
Aip07g02050 335 Gene3D - 146 271 - -
Aip07g02050 335 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED 123 264 - -
Aip07g02050 335 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER 123 264 - -
Aip07g02050 335 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 225 257 IPR017896 -
Aip07g02050 335 SUPERFAMILY 4Fe-4S ferredoxins 178 259 - -
Aip07g02050 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 85 128 IPR002100 GO:0003677|GO:0046983
Aip07g02050 335 Gene3D - 88 135 IPR036879 GO:0003677|GO:0046983
Aip07g02050 335 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 237 248 IPR017900 -
Aip07g02050 335 SUPERFAMILY SRF-like 77 134 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02050 Aip-Chr7 62564795 62571850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02050 77 146 MADS-box Gene Family AT2G14210 62.857 8.83e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip07g02050 SRF-TF 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02050 - - aip:110264240 443.351