Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02040 ATGGTTCCACTGCATGCAACTGTTGGAGATTTAAAGCAAGCTGCTGAGGCTGCACTGAGGGAAACTTACAGCATTGTAGAAAGGCTTATAGTGACAGACATCACAGAATTGATTGGTGTGAGTGATGAGGAAGTGCTCTTTGGGTTAATCCAGTCAGGTGTGGAGCTTTGTGTGAGGAGAATTGCTATAGACTTGTGTACTCCTTTGAAGTCTCAGGGTGGGGCTGACAACTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGGGATAAAAAAATGGTGTCTTGTGACATTTGTGAGGTATGGCAGCATACACGATGTTGTGGTATAGATGATTCTGAGGCAGTGCCACTACAGTTTGTGTGCACTGGGTGCTGTGATTCACCTGTACCCCCGAGGATTGAATCCGCATTTGGTATGGATTGTGCTGATATTTTTCAGATTTCACCAGAGCCTACACATTTACTGGAGTATGGATATGGGTACTGA 495 0.4505 MVPLHATVGDLKQAAEAALRETYSIVERLIVTDITELIGVSDEEVLFGLIQSGVELCVRRIAIDLCTPLKSQGGADNWKVRCECGAQDDDGDKKMVSCDICEVWQHTRCCGIDDSEAVPLQFVCTGCCDSPVPPRIESAFGMDCADIFQISPEPTHLLEYGYGY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02040 164 SMART PHD_3 81 128 IPR001965 -
Aip07g02040 164 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 131 - -
Aip07g02040 164 ProSitePatterns Zinc finger PHD-type signature. 82 127 IPR019786 -
Aip07g02040 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 134 IPR013083 -
Aip07g02040 164 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 131 - -
Aip07g02040 164 SUPERFAMILY FYVE/PHD zinc finger 74 134 IPR011011 -
Aip07g02040 164 Pfam PHD-finger 81 128 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02040 Aip-Chr7 61705180 61705674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02040 6 133 PHD Transcription Factor Family AT5G22260 34.074 2.20e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip07g02040 PHD 4e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02040 - - mtr:MTR_5g077750 263.462