Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01977 ATGACAACTGCCATGGATATGGTTAATAAGGTTAATCCTGAGAAGGAAGCATGGAACCTCAAAGTTTGGGTGATTAGGCTTTGGACTGTTCCTACTTTCACTGGTCAGCTTCTCCCAAATTCCATGGAGATGATTTTGGTTGATGAATCTGATGCTATATGCGATTTTATTCCAAAATCTGCTCTTACAATCTCTCCATTCACTGAACTTTTGGAAACCAAAGAGGATTCCGATTTCTTAGGTGATGTGGTGGGTCTGTTGGTCTCTGTGTCAGAAGAAAATGAATATGATAAAGATAGAAGGAAGATGAAGATGGCTGTGATGGAACTTGCTAAAAATGATTATAGGATTCGGTGTGCCTTATTTGGTGAATATGTTAATGAAGTTAATCGATTTCTATCTTCTTGGTATGCTGAACAGCCAGTTGTGGTTTTACAACATGCCAAAGTTAAGGTTTTTAGAGGTAGAGTTGGACTTCAGAATGTTATGTTTGCATCAAGGCTTGGATTTAATCTTAACATCCCAGAGGTGGCAGCATTTCGGAAAAGTTTTATTTCACATGGAGTTAGTGCATCCCAACCCATTGGCATTATTGGATCTGGAAAAAATATCGGAATAGAAGAAGACTTTATGAAGCTCACACCTAGGTGTATTGTGAAGTCGCTTGATCATAACAGCCAGGCTGGAACTTTTGTTGTACTAGCGAAGATAGCTGAAATAGTTGAGGATGGTCCTTGGTGGTACTCTGCTTGTGTGTGTGGCAGAGGTGTTCAAGCAGAATCTGGGATTTACTTTTGTCAATTTTGCAACATCCATGTTACAAATGTGACTCCTAGGTTTAGAGTGAAGGTGTTGGTTGAGGATTCGACTGGTGTTTCTATTTTTGTGCTCTTTGATCGTGAGGCAAGTTACCTACTGAATAAGACTTGTGCCCAGCTGTTTGAACAACATCTTAAGGATGTTGATTCTCCTCCTATATTCCAAGAAATTGTTGGAAAAACTATGTTGTTCAAGGTTCTTATTAGGCCTGTTGGGATGGAGAAATTCAAAGGGACTTATCTAATGAGGCGTGTTTGTGATGATGCTGCAATAGTTAGAATGTTTGAGCTCTCTGGTTCAGATTTGAGTCCTGAAAAGGCTGAGTTTGTACCAAAAGGAGAAGGATCATTTGGGGAACCCCCTAAGGTTACCAAATCATCGAATTTGGGATTGACTCCTTCCAGCTGCTCTGAGCTCTTTGCTGGTTCGCCTCAACGTACCCAAAAGGAATCAAGTGTTGTTGATTTGGGAGCTGATGAAGATGCTAAGAGAAAGTCTGTTGATACTGTGATGGATAAGTTAAATGAAGTGGATAGTTTTGAACATTCATGTGATGAAGTTGATGAAAGTGAAGTGGAGTATGTGGTTGGCCTTAATCGAAGCTCTCTTGATGCTGAGAAAGATGTGAAGCCTTCGTTGAAGAAGTTGAGAAGATCCTTGAGGCTGCAATTTGATGAAGCTGATGAGTCTCGTGGCTCGGGGAATGATGGCTCCTCTAGACAGGGGTTAATTGAGGTAGCTGCCCATAGCAGTTAA 1575 0.4076 MTTAMDMVNKVNPEKEAWNLKVWVIRLWTVPTFTGQLLPNSMEMILVDESDAICDFIPKSALTISPFTELLETKEDSDFLGDVVGLLVSVSEENEYDKDRRKMKMAVMELAKNDYRIRCALFGEYVNEVNRFLSSWYAEQPVVVLQHAKVKVFRGRVGLQNVMFASRLGFNLNIPEVAAFRKSFISHGVSASQPIGIIGSGKNIGIEEDFMKLTPRCIVKSLDHNSQAGTFVVLAKIAEIVEDGPWWYSACVCGRGVQAESGIYFCQFCNIHVTNVTPRFRVKVLVEDSTGVSIFVLFDREASYLLNKTCAQLFEQHLKDVDSPPIFQEIVGKTMLFKVLIRPVGMEKFKGTYLMRRVCDDAAIVRMFELSGSDLSPEKAEFVPKGEGSFGEPPKVTKSSNLGLTPSSCSELFAGSPQRTQKESSVVDLGADEDAKRKSVDTVMDKLNEVDSFEHSCDEVDESEVEYVVGLNRSSLDAEKDVKPSLKKLRRSLRLQFDEADESRGSGNDGSSRQGLIEVAAHSS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01977 524 SUPERFAMILY Nucleic acid-binding proteins 223 342 IPR012340 -
Aip07g01977 524 CDD RPA1_DBD_B_like 82 185 - -
Aip07g01977 524 MobiDBLite consensus disorder prediction 380 401 - -
Aip07g01977 524 Pfam Replication factor-A C terminal domain 231 341 IPR013955 -
Aip07g01977 524 SUPERFAMILY Nucleic acid-binding proteins 66 189 IPR012340 -
Aip07g01977 524 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 314 - -
Aip07g01977 524 CDD RPA1_DBD_C 219 363 IPR013955 -
Aip07g01977 524 MobiDBLite consensus disorder prediction 507 524 - -
Aip07g01977 524 Gene3D - 203 365 IPR012340 -
Aip07g01977 524 MobiDBLite consensus disorder prediction 497 524 - -
Aip07g01977 524 Gene3D - 57 193 IPR012340 -
Aip07g01977 524 PANTHER REPLICATION FACTOR A 1, RFA1 22 314 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01977 Aip-Chr7 57121032 57124227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01977 36 313 Core DNA Replication Machinery Family AT5G08020 24.490 1.01e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01977 - - aip:107607298 997.267