Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01970 ATGCAGTTCAAGCAGTTGTTGAACGAATACAATTACAATCTGAAGCTCACACTCTCAAATCCTCTCTTCTCTCACCTCTTCTCAAATCACCTCTTTCCCTCGTCCTCTCCAAATGAGGCCTGGATGTTAGTTCGCTGGGTTCCACCATCTGAAGGGGCTATCAAACTCAACGTGGATGGAAGTTCAAGGGGAAATCCAGGAAGAGCCGGATGTGGTGGCTTACTTAGAGATCAAGATGGCAACTGCATTACCGGATTCGTCAGTCATATTGGTTTCGCCGGCAGCGTTGCAGCGGAACTAGTAGCTATTCGCCATGGTTTGTGGTTGGCGTGGCAGTTTGGGTATAGAAAGGTGGAATGTGAAAATGATTGCATGGTGGCTCTCGAGATTATTCATGACAATGCCGAAGATTTCCCAGAATTCGCAGACATTGTGGAAGAAATTCATCAGTTCATGCTTCTTGAGTGGGATGTCATTATCTACCATGTCATGAGAGAAGCAAATTCCTGTGCTGATTTTCTGGCAAAAATAGAGCTGAAGGAGCGTCACTTGGCGGCTACACAGACCGTTAACAACTTCCGCGACCGATTAAAGCAGAAGCGCCTCTCTCTTCTCGACACTGACATTTCCGGCTACGCCAAATCGCAGGGGAGAACTCCGGTGACCTTTGGACCCACCGATCTGGTTTGCTGCAGAACCCTCCAGGGTCACACCGGCAAGGTGTATTCATTGGATTGGACTTGGGAAAAGAATCGAATTGTTAGCGCCTCCCAAGACGGTAGGCTAATAGTCTGGAATGCGCTGACGAGCCAGAAGACTCATGCCATCAAGCTTCCTTGCGCATGGGTCATGACCTGTGCCTTCTCTCCAACCGGTCAATCCGTCGCGTGCGGCGGCCTCGACAGCGTCTGCTCCATTTTCAATCTCAATTCCGCCGCCGATAGGGACGGTAATCTCCCCGTATCGCGTATGCTTACCGGCCACAAGGGTTATGTCTCCTCTTGCCAGTATGTTCCTGATGAAGACACTCACTTAATCACTGCTTCTGGTGATCAGACTTGTGTTCTTTGGGACATCACTACTGGTCTTAGAACCTCTGTTTTCGGCGGTGAATTTCAGTCCGGTCACACTTCAGATGTGCTTAGCATTTCAATTAATGGATCCAACTCTAGAATGTTCGTGTCTGGTTCTTGTGATTCAACTGCCCGGTTATGGGATACTCGTGTGGCAAGTCGCGCAGTGAGGACATTTCATGGGCATGAGAGAGACGTTAATGCTGTCAAATTCTTCCCTGATGGGAATAGATTTGGAACCGGCTCGGATGATGGAACTTGCAGATTGTTTGATATCAGGACAGGGCACCAACTCCAAGTATATCAACAGCAGCATAGTGAAAATGGCACTGCAAATGTGACCTCCATAGCATTCTCCATATCAGGAAGGCTCCTTTTTGCTGGATACACTAATGGTGATTGCTATGTTTGGGACACTTTATTGGCAAAGGTTGTATTGAATTTAGGATCTCTTCAAAACTCTCATGTGGGCAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGTTATGACACAAACTTAAAGATATGGGCATTTGGAGGGCATAGGAAGGTGATCTGA 1653 0.4767 MQFKQLLNEYNYNLKLTLSNPLFSHLFSNHLFPSSSPNEAWMLVRWVPPSEGAIKLNVDGSSRGNPGRAGCGGLLRDQDGNCITGFVSHIGFAGSVAAELVAIRHGLWLAWQFGYRKVECENDCMVALEIIHDNAEDFPEFADIVEEIHQFMLLEWDVIIYHVMREANSCADFLAKIELKERHLAATQTVNNFRDRLKQKRLSLLDTDISGYAKSQGRTPVTFGPTDLVCCRTLQGHTGKVYSLDWTWEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSAADRDGNLPVSRMLTGHKGYVSSCQYVPDEDTHLITASGDQTCVLWDITTGLRTSVFGGEFQSGHTSDVLSISINGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHERDVNAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYQQQHSENGTANVTSIAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNSHVGRISCLGLSADGSALCTGSYDTNLKIWAFGGHRKVI 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01970 550 PRINTS Beta G protein (transducin) signature 234 250 IPR001632 -
Aip07g01970 550 PRINTS Beta G protein (transducin) signature 290 307 IPR001632 -
Aip07g01970 550 PRINTS Beta G protein (transducin) signature 253 267 IPR001632 -
Aip07g01970 550 PRINTS Beta G protein (transducin) signature 272 287 IPR001632 -
Aip07g01970 550 SMART WD40_4 227 266 IPR001680 GO:0005515
Aip07g01970 550 SMART WD40_4 502 542 IPR001680 GO:0005515
Aip07g01970 550 SMART WD40_4 365 406 IPR001680 GO:0005515
Aip07g01970 550 SMART WD40_4 452 496 IPR001680 GO:0005515
Aip07g01970 550 SMART WD40_4 269 308 IPR001680 GO:0005515
Aip07g01970 550 SMART WD40_4 318 358 IPR001680 GO:0005515
Aip07g01970 550 SMART WD40_4 410 449 IPR001680 GO:0005515
Aip07g01970 550 Gene3D - 178 542 IPR015943 GO:0005515
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 266 - -
Aip07g01970 550 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 408 - -
Aip07g01970 550 SUPERFAMILY Ribonuclease H-like 53 180 IPR012337 -
Aip07g01970 550 SUPERFAMILY WD40 repeat-like 227 541 IPR036322 GO:0005515
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 458 IPR001680 GO:0005515
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 415 IPR001680 GO:0005515
Aip07g01970 550 ProSiteProfiles RNase H type-1 domain profile. 50 180 IPR002156 GO:0003676|GO:0004523
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 362 - -
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 453 - -
Aip07g01970 550 CDD RNase_H_like 56 176 IPR044730 -
Aip07g01970 550 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 177 546 IPR016346 GO:0007165
Aip07g01970 550 Gene3D - 52 177 IPR036397 GO:0003676
Aip07g01970 550 Pfam Reverse transcriptase-like 57 176 IPR002156 GO:0003676|GO:0004523
Aip07g01970 550 Pfam WD domain, G-beta repeat 462 496 IPR001680 GO:0005515
Aip07g01970 550 Pfam WD domain, G-beta repeat 414 449 IPR001680 GO:0005515
Aip07g01970 550 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Aip07g01970 550 Pfam WD domain, G-beta repeat 323 358 IPR001680 GO:0005515
Aip07g01970 550 Pfam WD domain, G-beta repeat 512 541 IPR001680 GO:0005515
Aip07g01970 550 Pfam WD domain, G-beta repeat 374 406 IPR001680 GO:0005515
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 510 550 - -
Aip07g01970 550 ProSiteProfiles Trp-Asp (WD) repeats profile. 510 541 IPR001680 GO:0005515
Aip07g01970 550 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 177 546 - -
Aip07g01970 550 PRINTS G protein beta WD-40 repeat signature 253 267 IPR020472 -
Aip07g01970 550 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Aip07g01970 550 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Aip07g01970 550 CDD WD40 230 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01970 Aip-Chr7 56663200 56674942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01970 159 496 U-box Gene Family AT2G33340 24.128 4.72e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01970 K04536 - rcu:8271413 706.827