Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01937 ATGTTTATGTCAGCCACAATGGATCAATACACACAACAGTTTCACTCGGATCCATTTCAAGGGGGTGAGTTAATGGAAGTACTTCAACCTTTTTATAGAAGTCTTTCTACAACAACCACCACCACCACAAGCACAATTACTTCATTACCCTCATCATCTAATTCCCATCTACCCTCAACTTCCACCACCTTGAATTCTTCTTCTTACTACAATCCTTCTATAAACTTCTATTCTTCTTCTCCACAGCCTGATTTCTACACTCAATATGGTTGCCCTTCAATGATGACCCCTTTGTTTCCTTCACGTTTATCAAACAGCCAGAATTTCATTGGCTTTGAGCAACCACCGTTTTCTTCTATTGGGCTCAACTATCAGATCCAGGCCCAATCACAAACACAACAGAGCAACACCCTAAGCTTCCTCAGCCCAAAGCCAATTCCCATGAAACAAGGCCCACCAAAGCCCACAAAACTCTACAGAGGCGTACGGCAAAGGCAATGGGGAAAATGGGTGTCTGAGATCAGACTCCCAAAGAACCGCACTCGGCTTTGGCTTGGAACTTTCGAGACTGCCGAGGAAGCTGCTTTGGCTTATGATAAAGCGGCTTTTAAGCTAAGAGGTGATTTCGCGAAGCTCAACTTCCCTAACCTTAAGCACCACGGTTCTTGCATCCTTGGCGGCGGTTTTGGGGAGTATAGGCCTCTTCATTCCGCTGTTGATGCCAAGTTGGATGCTATCTGTGAAAATCTCTCTCAGATTCGGAAACAAGGGAAGCAGGGAAAGAAGCCTGTGATGAGGTTAAAGTCAAAGTCAAAAGCAACAACTCCAAATGTAGAAGGAGATGATGATGGTTGTTTCAATGTTGAGAGTGAAGAAGCCTCTGCGGGGTCTTCTCCTTTGTCTGATCTTACGTTTGATGACGTCAGTGAGTCACAGTGGGATGCTCCTTCAGAACATTTTTATCTGCAGAAGTTCCCTTCTTATGAGATCAACTGGGATTCTCTATGA 1008 0.4454 MFMSATMDQYTQQFHSDPFQGGELMEVLQPFYRSLSTTTTTTTSTITSLPSSSNSHLPSTSTTLNSSSYYNPSINFYSSSPQPDFYTQYGCPSMMTPLFPSRLSNSQNFIGFEQPPFSSIGLNYQIQAQSQTQQSNTLSFLSPKPIPMKQGPPKPTKLYRGVRQRQWGKWVSEIRLPKNRTRLWLGTFETAEEAALAYDKAAFKLRGDFAKLNFPNLKHHGSCILGGGFGEYRPLHSAVDAKLDAICENLSQIRKQGKQGKKPVMRLKSKSKATTPNVEGDDDGCFNVESEEASAGSSPLSDLTFDDVSESQWDAPSEHFYLQKFPSYEINWDSL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01937 335 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Aip07g01937 335 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Aip07g01937 335 MobiDBLite consensus disorder prediction 42 64 - -
Aip07g01937 335 CDD AP2 157 217 IPR001471 GO:0003700|GO:0006355
Aip07g01937 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 334 - -
Aip07g01937 335 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Aip07g01937 335 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 3 334 - -
Aip07g01937 335 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Aip07g01937 335 MobiDBLite consensus disorder prediction 257 309 - -
Aip07g01937 335 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700|GO:0006355
Aip07g01937 335 SUPERFAMILY DNA-binding domain 158 215 IPR016177 GO:0003677
Aip07g01937 335 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Aip07g01937 335 MobiDBLite consensus disorder prediction 136 158 - -
Aip07g01937 335 MobiDBLite consensus disorder prediction 291 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01937 Aip-Chr7 53493104 53495006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01937 3 335 AP2-EREBP Transcription Factor Family AT1G78080 45.232 3.82e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip07g01937 AP2 8.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01937 K09286 - gmx:732559 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01937 07 53493104 53495006 Aip07g01937 07 53493104 53495006 ECH
Aip07g01937 07 53493104 53495006 Aip07g01937 07 53493104 53495006 PCT