Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01934 ATGCCTCCACCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTTTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGGCATATTTTGCTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGACTTTTTAGTTGTCGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGCGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGGGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGACATTCCTGAAGTTGTTGAATTCAGGCAAAGTATGATTGAGCAAGGTGTCAGTGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTCTCTCCTTGGAAGATGATTTCATGCGTTTAATTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGTGCAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCCTATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTCACTCCAAGATTTAAAATTAAAGTAACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCTTCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTGTATGTTGGCTCATTGGAAAGAAGTTGCTGCTCAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTAGGAGAATTTGTGATGATTCTACCATTATTGCGATGTTTGAACTTCCCAATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGAGCATGATTTACACAAATCTGTTCCTCGTGGAAAAGCGGATGTTGGTATTAAGAAGGAGTCTTCTAATAGTTTTATCAAAAGTGAGAAAGATGCTTGTGAGTGTTCTGGGATTTTGTGTAAATCTCCCGTTCTTATAGATTTTTTGGCTGAAAAACAGCCTGTTGTTTCCGGAGGGACTGAGTTTGTTGGCTTAATTGATGGTGAGCATGGAAAAGAAGATAAAACTCCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTAGATATATTGCTTAGCTCAGCAGAAAAAGAAACTCAGGAGCTGTTGTCCGATGTTCTTGAAGCACCTTCACAAAATGGAGAAAAGCTTACCCATGAAAATCATGTTGTCACCTCCAAGAGTAAGAGGAATTTGAATCCTTAA 1698 0.3852 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMEMILLDEHCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFAVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVVGEEKEYAKEGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYGEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRQSMIEQGVSGTQPLFIANEGKVLSLEDDFMRLIRKCTIEELQDNNQEGSFIIFGAIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKVTVEDHTGEGIFLLFDREASYLLKKSCADLFTEVQRDASVCWLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDSTIIAMFELPNYDADDESTPKKEHDLHKSVPRGKADVGIKKESSNSFIKSEKDACECSGILCKSPVLIDFLAEKQPVVSGGTEFVGLIDGEHGKEDKTPSNDTVSDDLSAELDILLSSAEKETQELLSDVLEAPSQNGEKLTHENHVVTSKSKRNLNP 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01934 565 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Aip07g01934 565 CDD RPA1_DBD_A_like 19 107 - -
Aip07g01934 565 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 364 - -
Aip07g01934 565 SUPERFAMILY Nucleic acid-binding proteins 267 384 IPR012340 -
Aip07g01934 565 SUPERFAMILY Nucleic acid-binding proteins 120 234 IPR012340 -
Aip07g01934 565 PANTHER REPLICATION FACTOR A 1, RFA1 22 364 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip07g01934 565 Gene3D - 255 412 IPR012340 -
Aip07g01934 565 CDD RPA1_DBD_C 269 402 IPR013955 -
Aip07g01934 565 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Aip07g01934 565 Pfam Replication factor-A C terminal domain 285 370 IPR013955 -
Aip07g01934 565 Gene3D - 114 242 IPR012340 -
Aip07g01934 565 CDD RPA1_DBD_B_like 140 235 - -
Aip07g01934 565 MobiDBLite consensus disorder prediction 539 565 - -
Aip07g01934 565 Gene3D - 4 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01934 Aip-Chr7 53106571 53109401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01934 11 363 Core DNA Replication Machinery Family AT5G08020 23.698 1.49e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01934 - - adu:107471135 972.615