Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01927 ATGAAAGCTAGCAACATATATAATGCATCAAAGAAGTCTCAGAACAAAGAAGAACCAAAGACTAGAACAAGAAGAAACTCCACTGACACTGTAATCACACAAAAGCTGAGTATCTCAGACCAAAAACCTTGCGCAAAAAGTACCCTTGTGCTTCAAAGTAGAAGACTATCAGATGCTGCAAGAATCTCAACATCCACATCGGCATCAACCTCGACATCATCGAATGACGACAGCAAACTGCAGCTGGCTAAGATAAATGAGAGAAACAACAAGTCTCCGGCCAGGGCACAACTGGCGGGGAACTTGCTTGTAAATAATAACACTCCAAGAGCAAAGAGCCTCCGGGAGTGTGGACCTAAGAGCAAAAAAGAGTGGACCTCCTCGTCCGGAAAAGCTTTGATGGGTAACATAATGAGGAAGAACAGCTGCGGCGGGGATGAGTTTGCGAGGAACAAGAAGGTGGTGGACCCGGAGGTGTTGAAGAACATGGGAAACAATGCGTATAAGGGAGGAAGGTTTGAAGAGGCTGTGGCGTTGTATGACAGAGCAATTGCTTTGGATTCAAGTAAGGCAACTTATCATTGCAACAAGAGTGCTGCTTTGATTGGCTTAAGAAGATTTCAAGAAGCACTTGCTGAGTGTGAGGAATCTGTTAGGTTGGAGCCTTCGTATACCAGAGCTCATAACCGTTTGGCAACAATATATTTCAGATTGGGAGAAGCAGAGAAAGCCCTCGATTGCAATCAGTTAACCCCAGATACTGATTCTGCACTGGCTTTCCAAACTCAGACTCTTCAGAACCACCTTAATAAATGCAATGAAGCTCGGAAATTTAATGAATGGGGTGTTGTACTAAAGGAAACACAGTCAGCAATATCCTTAGGGGTTGATTCATCTCCACAGGTCTATGCTTTGCAAACTGAAGCCTTGTTGAAGCTCCTAAGATATCAAGAGGCACAAGTCACCTATGAGAAAATGCCAAAATTCTCACCTGATTGGTGCAACAAGATTTTTGGCTTTGCTCGCAGTTCCTACCAGTTCATGATCGCCGCACAGGTTTACTTGGCAGCTGGCAGGTTTGAGGATGCAGTTGCGGCCGCTCAGAAAGCAGCTAAGGTGGATCCAAGCAACAGAGAGGCGAATGCAATGTTAAGGAAGGCCAGAGCAGTAACATCAGCAAGAATGAGTGGAAACTTACTCTTCAAGGCATCGAAGTTTGTGGAAGCATCCGCAGTGTACAACGAAGGACTAGATCATAATCCGCACAACTCGGTCCTGCTGTGCAACAGAGCAGCGTGTCGTTCCAAGTTCGGCCAATTCGAGAAAGCTATTGAAGATTGCAATGCAGCACTCATAGTCCAGCCTTCCTACAGCAAAGCAAGGTTAAGGAGGGCAGATTGCAACGCCAAGTTGCAAAGATGGGAAGTTGCCATTCAAGACTATGAAATGCTACTAAGGGAGAAGCCAGGGGATGAGGAAGTAGCCAGGGCATTGTTTGAGGCTCAGCTACAACTTAAGATGCTCCGCGGCGAATTTATTGTAAACTTGAAATTTGGCACGAATTTGGTGTTCATTTCAAACAATGATCAATTTAGACAATACGTAACTTCTCCTGGAATGGCTGTGGTACTATTTACCAACAGGGCAGCAAACAAACAAGTACTTCTAGTGTTGGAGCAAATTAGCAAGCGATTCCCATCAGTGATTTTCCTCAAGGTGGAGATTGAGGACCATCCCTACTTGGCAAAATCAGAAGGTGTGAACTCTATTCCAGCTTTCAAAATATACAAGAATGGATCAAGGGTAAAAGAAATTTCTGGAAAAAACCATGATCTATTAGAAAAATCAGTTCAATTGTATAGCGGCTGA 1869 0.4425 MKASNIYNASKKSQNKEEPKTRTRRNSTDTVITQKLSISDQKPCAKSTLVLQSRRLSDAARISTSTSASTSTSSNDDSKLQLAKINERNNKSPARAQLAGNLLVNNNTPRAKSLRECGPKSKKEWTSSSGKALMGNIMRKNSCGGDEFARNKKVVDPEVLKNMGNNAYKGGRFEEAVALYDRAIALDSSKATYHCNKSAALIGLRRFQEALAECEESVRLEPSYTRAHNRLATIYFRLGEAEKALDCNQLTPDTDSALAFQTQTLQNHLNKCNEARKFNEWGVVLKETQSAISLGVDSSPQVYALQTEALLKLLRYQEAQVTYEKMPKFSPDWCNKIFGFARSSYQFMIAAQVYLAAGRFEDAVAAAQKAAKVDPSNREANAMLRKARAVTSARMSGNLLFKASKFVEASAVYNEGLDHNPHNSVLLCNRAACRSKFGQFEKAIEDCNAALIVQPSYSKARLRRADCNAKLQRWEVAIQDYEMLLREKPGDEEVARALFEAQLQLKMLRGEFIVNLKFGTNLVFISNNDQFRQYVTSPGMAVVLFTNRAANKQVLLVLEQISKRFPSVIFLKVEIEDHPYLAKSEGVNSIPAFKIYKNGSRVKEISGKNHDLLEKSVQLYSG 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01927 622 Pfam TPR repeat 164 196 - -
Aip07g01927 622 ProSiteProfiles TPR repeat profile. 344 377 IPR019734 GO:0005515
Aip07g01927 622 MobiDBLite consensus disorder prediction 1 30 - -
Aip07g01927 622 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Aip07g01927 622 MobiDBLite consensus disorder prediction 58 80 - -
Aip07g01927 622 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 8 619 - -
Aip07g01927 622 Pfam Tetratricopeptide repeat 350 423 - -
Aip07g01927 622 Pfam Tetratricopeptide repeat 438 491 - -
Aip07g01927 622 Pfam Tetratricopeptide repeat 200 245 - -
Aip07g01927 622 SUPERFAMILY Thioredoxin-like 505 616 IPR036249 -
Aip07g01927 622 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 619 IPR044534 -
Aip07g01927 622 Gene3D Glutaredoxin 517 621 - -
Aip07g01927 622 SMART tpr_5 390 423 IPR019734 GO:0005515
Aip07g01927 622 SMART tpr_5 344 377 IPR019734 GO:0005515
Aip07g01927 622 SMART tpr_5 225 258 IPR019734 GO:0005515
Aip07g01927 622 SMART tpr_5 458 491 IPR019734 GO:0005515
Aip07g01927 622 SMART tpr_5 191 224 IPR019734 GO:0005515
Aip07g01927 622 SMART tpr_5 424 457 IPR019734 GO:0005515
Aip07g01927 622 SMART tpr_5 157 190 IPR019734 GO:0005515
Aip07g01927 622 SUPERFAMILY TPR-like 395 506 IPR011990 GO:0005515
Aip07g01927 622 Pfam Thioredoxin 527 615 IPR013766 -
Aip07g01927 622 CDD TRX_family 529 607 - -
Aip07g01927 622 Gene3D Tetratricopeptide repeat domain 155 509 IPR011990 GO:0005515
Aip07g01927 622 SUPERFAMILY TPR-like 157 380 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01927 Aip-Chr7 51895638 51900781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01927 158 389 U-box Gene Family AT3G07370 23.881 8.69e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01927 K09527 - gmx:100782846 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01927 07 51895638 51900781 Aip07g01927 07 51895638 51900781 ECH
Aip07g01927 07 51895638 51900781 Aip07g01927 07 51895638 51900781 PCT