Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01887 ATGGCGGCGACAACAACCAAAAACATATTGAAAGAAACGGTGCAGCGATATGAAGAAGACGCAAGCGACGATAAGAGCTTCGAGGAGCTCGGTGTGGACGCTCGTCTCATTCGTGCCTTGCTCAAGAAAGGAATCGACAAGCCCACACCAATTCAGAGAGTCGCTATTCCACTCATTCTGGAAGGTAAGGATGTGGTTGCTCGTGCGAAGACAGGTTCTGGGAAGACGTTTGCTTACCTTCTCCCCATGCTACAGAAACTATTCGCTAATGTTGATCACAAGAAGCAGGCACCCAATGCTTTTGTTCTTGTTCCGACTCGCGAGCTGTGTCAACAGGTCTACACAGAGGTTGTGTCACTCATTGAGTTATGCCGAGTTCAACTGAAAGTCGCCCAATTGAATAGCAATATGCAAGCTTCTGATCTGCGTGCAGCTCTGACTGGACCTCCTGATATTTTGATATCCACACCTGCTTGCCTAGCAAAGTGCTTGTTTGATGGTGTACTTCAACCAGCTTCCATTAATGCTACGCTTGAAACTCTAATTCTTGATGAGGCAGATCTTCTATTATCATATGGATATGAAAATGATATAAAATCTTTTACGCCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCCGCAACATCAAGTACTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCATTCATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGACGTCATCCCAAAAAATGTTCAGCAGTTCTGGATCTTGTGCCCTGCCAATGATAAATTGCTCTACACCCTTGCTGTTTTGAAGTTGGAGTTAGTGCAAAAGAAAGTTCTGATATTCACTAATGACATAGACATGAGTTTCAGATTGAAATTGTTCCTAGAAAAGTTTGGGATTAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCCCGACTTCATATTCTTGAGGAGTTCAATGCTGGTCTGTTTGATTATCTTATTGCAACTGATGTCAGTCAGTCGAAGGAGAAGGATGAAGCACCTAAAGAAGGCAAAGGATCACGAAAGTCTAGGAAACATAAACTTAAACTCGATTCTGAATTTGGAGTAGTAAGGGGAATTGATTTCAAAAATGTATTCACGGTTATAAACTTTGATATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATATAGTTCTGGTGCTTCTATTTCTCTGGTTTCAACAGATGAGATGGAAACATTGGAAGAAGTAAAAGCTTTTGTTGGTGATGATGAAAACAAGGGCTCAAACACAATTGTGGAGTTTCCTTTCCTCACCAAGAATGCAGTTGAATCTTTGCGGTATAGGGCTGAGGTGATTTATCATTTCCTATTTTCCTTTACTCTTGAAGAAAAAACTTCAGATCTGTTGAAACATGACAAAGTTTTAAGCAAGAATGCACCTCCTTCGCACCTGCGTGATGTGCCTAACTACCTATTAGACAAGACCACCCAGGAGGCAAGGAAAATGGTCAAGCTTGCAAGTGATGCAATGGGAAATAATAATCATCGCAAGGGATTCAAGAAAAAACCAAAAACAGGTGGAGACCCTCTGAAGGCTATCTCTGCT 1632 0.4148 MAATTTKNILKETVQRYEEDASDDKSFEELGVDARLIRALLKKGIDKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFANVDHKKQAPNAFVLVPTRELCQQVYTEVVSLIELCRVQLKVAQLNSNMQASDLRAALTGPPDILISTPACLAKCLFDGVLQPASINATLETLILDEADLLLSYGYENDIKSFTPHVPRSCQCLLMSATSSTDVDKLKKLILHNPFILTLPEVGNNKDDVIPKNVQQFWILCPANDKLLYTLAVLKLELVQKKVLIFTNDIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQSKEKDEAPKEGKGSRKSRKHKLKLDSEFGVVRGIDFKNVFTVINFDMPQSVAGYVHRIGRTGRAYSSGASISLVSTDEMETLEEVKAFVGDDENKGSNTIVEFPFLTKNAVESLRYRAEVIYHFLFSFTLEEKTSDLLKHDKVLSKNAPPSHLRDVPNYLLDKTTQEARKMVKLASDAMGNNNHRKGFKKKPKTGGDPLKAISA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01887 544 Gene3D - 2 238 IPR027417 -
Aip07g01887 544 SMART helicmild6 293 405 IPR001650 -
Aip07g01887 544 CDD DEADc_DDX56 32 238 - -
Aip07g01887 544 SMART ultradead3 44 256 IPR014001 -
Aip07g01887 544 CDD SF2_C_DEAD 253 414 - -
Aip07g01887 544 Gene3D - 241 443 IPR027417 -
Aip07g01887 544 PANTHER RNA HELICASE 21 505 - -
Aip07g01887 544 Pfam DEAD/DEAH box helicase 49 225 IPR011545 GO:0003676|GO:0005524
Aip07g01887 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 237 IPR027417 -
Aip07g01887 544 Pfam Helicase conserved C-terminal domain 264 405 IPR001650 -
Aip07g01887 544 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Aip07g01887 544 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Aip07g01887 544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 236 IPR014001 -
Aip07g01887 544 MobiDBLite consensus disorder prediction 517 544 - -
Aip07g01887 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 428 IPR027417 -
Aip07g01887 544 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 21 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01887 Aip-Chr7 46283482 46288514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01887 26 428 Eukaryotic Initiation Factors Gene Family AT3G19760 26.303 4.37e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01887 K14810 - gmx:100800749 839.336