Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01751 ATGGGTGGTACCCTTTCATTCAATCCAATATTCAACCTCACATTTTCCTTTTTCCTCGTCACGGTTACCACCACCTTTACCCTCATTGGCCCCTTCATTGTTGCCGACGCCGACGACGATTCTAGAGAATCTCCCCCTTCATTCCCCAGTTTCCAAAACTCAACGAATAGGGTACCATCCACCAACGGCATATCGACAAGAAACTCCAACCATTTGAACAGAAAATCAGAGCCATTAAAGCCAAGCACGATTATCGTGGTTGGTGTCTTAACCACCTTGTTCTCTCTTACATTTATTTTCCTTCTTTACATCAAGCATTGCATCCATAGGAATAACGAAAACCAATCCCATCAAGAAGGTGAGCCACTGCAGAGAAATGACTCTGGCATTGATCGTGGTGTTGTGGAAAAGCTACCGATTTTTCGATTTGGATCGCTAAGAGGACAAAAAGAAGGGTTAGATTGTGCAGTTTGCTTGAACAGGTTCGAGCACACAGATGTTCTTCGTTTGCTTCCAAAGTGCAATCATGCTTTCCATGTAGATTGTGTAGACAAGTGGTTCGATGCGCATTCAACTTGCCCTCTTTGTCGCAATAGGGTGGAGCTTAAAGACATCGTCCCGAGGGAACAATTACAAGAACAAGGAGAAAGAGATGAATTAGTGGAGGATATTGAGAGAGGAACCTTTCGGAGAGTCTCGGGGAGGCACTCCTCGGTGTTGGGGGAAAGAGAAGGTGGCTTCTTGGAGATTATTACACATAATTCAAATGAGAAAAAGAATAAAAAAATGAAGTCTTCTAGTAGCACCAGGTCATTTCACACTTCTTCTAGAAGCTTCGGAGGCTTTGTTCGCCCAAGAAAGGACAAAACGTTAATGGCAAGGCAAGAAGGTAATTTTAGTAATAATAACAACATAGGTAGTAATGCAGAGCACCATAGGTTGCAGCACCAAATTATTATTGATTCACCAGTGGCCTCTTTCGTTAAATCTAACGGTAAAGGAGAGTCATCATCATCACATCCTCATCATAGATGGAGTGAAGTTCCACAATCGGATCTTTTGTACTTGACTTCTGAGATGATAATCAATGATGCTGCTTCTTCTGTACCTGGGGAAAGAAGAGCAACTCATAACCACATCGTTAGCAATGAGAATAAGAATAATGGCGGTTTGAAGAATTTGAGGAGTTTTTCAGAGGTTACGGGAATGAGTAGGTTCTTAGGAGGGAGCAAAGGAAGAGAACATGGCAATCACGAAGAGCAAGATAAGCAACACTGTGTGGGGGTTGCTACAAGGTGGTCAGCTTGGAGCTCAAGGTCACAACGACCGCAAGCAAATGTTCAGTCGGGATcatag 1356 0.4307 MGGTLSFNPIFNLTFSFFLVTVTTTFTLIGPFIVADADDDSRESPPSFPSFQNSTNRVPSTNGISTRNSNHLNRKSEPLKPSTIIVVGVLTTLFSLTFIFLLYIKHCIHRNNENQSHQEGEPLQRNDSGIDRGVVEKLPIFRFGSLRGQKEGLDCAVCLNRFEHTDVLRLLPKCNHAFHVDCVDKWFDAHSTCPLCRNRVELKDIVPREQLQEQGERDELVEDIERGTFRRVSGRHSSVLGEREGGFLEIITHNSNEKKNKKMKSSSSTRSFHTSSRSFGGFVRPRKDKTLMARQEGNFSNNNNIGSNAEHHRLQHQIIIDSPVASFVKSNGKGESSSSHPHHRWSEVPQSDLLYLTSEMIINDAASSVPGERRATHNHIVSNENKNNGGLKNLRSFSEVTGMSRFLGGSKGREHGNHEEQDKQHCVGVATRWSAWSSRSQRPQANVQSGS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01751 451 MobiDBLite consensus disorder prediction 256 280 - -
Aip07g01751 451 SUPERFAMILY RING/U-box 134 203 - -
Aip07g01751 451 CDD RING-H2_PA-TM-RING 154 197 - -
Aip07g01751 451 PANTHER RING-H2 FINGER PROTEIN ATL43 61 442 - -
Aip07g01751 451 Pfam Ring finger domain 154 197 IPR001841 -
Aip07g01751 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 205 IPR013083 -
Aip07g01751 451 MobiDBLite consensus disorder prediction 45 75 - -
Aip07g01751 451 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 61 442 - -
Aip07g01751 451 MobiDBLite consensus disorder prediction 40 75 - -
Aip07g01751 451 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Aip07g01751 451 SMART ring_2 155 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01751 Aip-Chr7 37458845 37460200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01751 79 440 C3H Transcription Factor Family AT5G05810 37.845 3.40e-55 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01751 K19041 - twl:119999828 246.514