Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01718 ATGGGGAGAGGGAAGATCGCGATAAGAAGGATCGACAATTCCACGAGCAGGCAAGTGACCTTCTCAAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTGGCAAACTCTATGATTTCTCCAGTACCAGCATGAAATCAGTAGTTGATCGATACAACAAAACCAAGGAAGAACTAGATCAGCTTGGGAGTTCAACCTCTGAAGTTAAGTTTTGGCAACGGGAGGCGGCAATGCTAAGGCAACAATTGCTAAGTTTGCAAGAGAGTCACCGGCAAATTATGGGAGAAGAATTGTCAGGTTTGACAATCAAAGATTTACAGACTTTGGAGAACCAGTTGGAAATTAGCCTTCGAGGTGTCCGTACAAAAAAGGATCAGCTTTTAATGGATGAAATACAAGAATTAAATCGAAAGGGGAACCTCATACACCAAGAAAATGTGGACCTATACGAGAAGATAAACTTAATCCGTCAAGAAAACATGGAATTAAAAAAGAAGATCAGAATGTGGAGAATAGAAATTCTGTCCTCACAAACAGTCTAG 594 0.4175 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVVDRYNKTKEELDQLGSSTSEVKFWQREAAMLRQQLLSLQESHRQIMGEELSGLTIKDLQTLENQLEISLRGVRTKKDQLLMDEIQELNRKGNLIHQENVDLYEKINLIRQENMELKKKIRMWRIEILSSQTV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01718 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip07g01718 197 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Aip07g01718 197 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip07g01718 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip07g01718 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip07g01718 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip07g01718 197 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Aip07g01718 197 Coils Coil 163 190 - -
Aip07g01718 197 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Aip07g01718 197 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip07g01718 197 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 186 - -
Aip07g01718 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip07g01718 197 Coils Coil 86 106 - -
Aip07g01718 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 - -
Aip07g01718 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip07g01718 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01718 Aip-Chr7 35812090 35820180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01718 1 186 MADS-box Gene Family AT4G37940 67.204 7.73e-86 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip07g01718 K-box 4.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01718 K09264 - gmx:100812413 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01718 07 35812090 35820180 Aip07g01718 07 35812090 35820180 ECH