Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01677 ATGGAGTTGTATGACCATGATTTCTTGGATGAGTTAATGTCACTAAGAAGAGAAACATGGGAAAGCACAAATAATAATCCATGTGATGAAGAAGGAAACTACCAATTACTCTTCTCAAATAATAATGGGTGGGATAATAGTGGCGGTTTTGATCATCAAAATTATTACTCATCACCTTCTTCTATTTTTGTTCCAAACTCCTCTTATTCTTGTTCTTCTTCTTCTTACCAAGAAGTTCCTCAAAATTGCAACGATTATTATTGTGACACTACCTTCAATGAAATCTATAGTTCCTTGCTTGAAGAATTCTCAGCACCACAGATCAATAATAGTGACACTACTACTCCACCACCAATACTAATGAGTGATCATCAAGAGGATTATAATAATAGTAATAATAATGAGAATCCATTATTGGTGTCTATGTTGGTGGAAGAAGAGCTTCAAAGCTTGGAGATGCAAAGAGAGTGCAAAATGGAGGCAAGTCAATCATCTTCTCCTCCTGTTTTCAACTCGGAAAGGAAGAACAATAATAGAGCAAAGAAGGTTGAGGGCCAACCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGGAAGAGATTGAATGATAGGCTCTCCATGCTTAGATCAATTGTCCCTAAGATTAGCAAGATGGACAGAACATCTATACTTGGTGACACCATTGATTACATGAAGGAACTACTAGACAAGATCAATACTTTGAAACAAGAAATCCAAGTGGTGGATGACTCAAATGGCATTTTATCCAATGATATACACCCAAATGATATTTTAGTGAGAAATTCTCCCAAGGTACATGAACTTAATTGA 831 0.3634 MELYDHDFLDELMSLRRETWESTNNNPCDEEGNYQLLFSNNNGWDNSGGFDHQNYYSSPSSIFVPNSSYSCSSSSYQEVPQNCNDYYCDTTFNEIYSSLLEEFSAPQINNSDTTTPPPILMSDHQEDYNNSNNNENPLLVSMLVEEELQSLEMQRECKMEASQSSSPPVFNSERKNNNRAKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDKINTLKQEIQVVDDSNGILSNDIHPNDILVRNSPKVHELN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01677 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 248 IPR036638 GO:0046983
Aip07g01677 276 MobiDBLite consensus disorder prediction 175 200 - -
Aip07g01677 276 MobiDBLite consensus disorder prediction 159 200 - -
Aip07g01677 276 PANTHER DNA BINDING PROTEIN 3 272 - -
Aip07g01677 276 SMART finulus 191 240 IPR011598 GO:0046983
Aip07g01677 276 Gene3D - 173 252 IPR036638 GO:0046983
Aip07g01677 276 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 272 - -
Aip07g01677 276 Coils Coil 231 251 - -
Aip07g01677 276 Pfam Helix-loop-helix DNA-binding domain 191 234 IPR011598 GO:0046983
Aip07g01677 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Aip07g01677 276 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01677 Aip-Chr7 33809663 33811959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01677 159 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G65640 64.800 3.04e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip07g01677 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01677 - - gmx:100814388 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01677 07 33809663 33811959 Aip07g01677 07 33809663 33811959 ECH