Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01594 ATGCAATGTGAGCATGCATGGGGTTGTGCCAAGCTAAGGGTGTTCTACAAGAACAAAGAAGATGGTGGTAAACCTAATAGCATGGGAAGCTGCTATGATGACACAGGCTCTTCATCTCTTCCAACATTAATGGATTCTTACATCAGCTTTGACCAACAACAACAATCTCAAACCCATCTTCATGCTGATGAGTATGAGCAAGCTGCGAAGAAATCTTCTCCAACAACCGGTGGAGTGAAGAAGCCGCATCGTTTTCGCCCCGGAACTGTTGCCCTACGTTCTACATTTTTTTGTTTCAATGAGATACGAAAATACCAAAAGAGTACCGAGCTTCTGATTCGCAAGTTGCCATTCCAGCGTTTTGTTCGTGAAATTGCTCAGAACTTCAAGACGGACCTGAGGTTTCAGAGCCATGCGATTTTTGCACTTCAGGAGGCAGTGGAGTCTTATCTAGTGGGACTCTTTGAGGACACAAATTTGTGTGCGATCCACGCCAAGGGAGTTACCATTATGCCCAAGGACCTTCAGCTTGCCAGGCGTATCCGTGGCGAACGTGCTTAA 561 0.4599 MQCEHAWGCAKLRVFYKNKEDGGKPNSMGSCYDDTGSSSLPTLMDSYISFDQQQQSQTHLHADEYEQAAKKSSPTTGGVKKPHRFRPGTVALRSTFFCFNEIRKYQKSTELLIRKLPFQRFVREIAQNFKTDLRFQSHAIFALQEAVESYLVGLFEDTNLCAIHAKGVTIMPKDLQLARRIRGERA 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01594 186 Pfam Core histone H2A/H2B/H3/H4 62 182 IPR007125 GO:0003677
Aip07g01594 186 Gene3D Histone, subunit A 49 186 IPR009072 GO:0046982
Aip07g01594 186 PANTHER HISTONE H3 67 186 - -
Aip07g01594 186 PRINTS Histone H3 signature 148 164 IPR000164 GO:0000786|GO:0003677|GO:0030527
Aip07g01594 186 PRINTS Histone H3 signature 164 185 IPR000164 GO:0000786|GO:0003677|GO:0030527
Aip07g01594 186 PRINTS Histone H3 signature 60 74 IPR000164 GO:0000786|GO:0003677|GO:0030527
Aip07g01594 186 PRINTS Histone H3 signature 130 148 IPR000164 GO:0000786|GO:0003677|GO:0030527
Aip07g01594 186 SMART h35 77 186 IPR000164 GO:0000786|GO:0003677|GO:0030527
Aip07g01594 186 PANTHER HISTONE H3 67 186 IPR000164 GO:0000786|GO:0003677|GO:0030527
Aip07g01594 186 SUPERFAMILY Histone-fold 56 183 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01594 Aip-Chr7 29897896 29900060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01594 13 56 NAC Transcription Factor Family AT1G56010 56.818 1.24e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01594 K11253 - atr:18441510 199.904