Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01548 ATGGGTTATTTATGTGACTTTTGTGGAGAGCAAAGGTCCTTGGTATACTGCCGCTCAGATGCTGCATCCTTATGTTTGTCGTGCGATCGGAATGTTCATTCTGCTAATGCCCTTTCTAAGCGCCATTCCAGAACCCTTGTATGTGAGAGATGTAACTCACAACCTGCTTTTATAAGATGTGCTGAGGAGAAAATTTCACTCTGTCAGAACTGTGACTGGCTCGGTCATGGTACCACTGCGTCTACTTCGGGGCATAAGAGGCAAACAATCAATTTATATTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTCAGATATACCTGCTATGGGTGAAACATGTGAGCAGGAACTTGGTTTAATGAGCATTAGTGAGAACAGTGAAAAGAGTGCTTGGGTTCCTCCAGAAAACCAGAATGCTTCTAGTTCTGCTCAAGCGACCAATCTACCCGGCAAGGATAAATCTTGGGTTGGCACATCTACAATGCCTGAGTCAAGCTCAGAACCTCGTATCATGGACCAGCCACCTGGACCTTCCAATGCATGCGTGCCTAAGTTATATTGTCCTGTGAAAACAACTCCTGCACTCTGTGAAGATGATGATAATCTATATGACGATTTCAACATGGATGAAGTGGATCTGGATCTTGAGAACTATGAGGAACTTTTTGGTGTGGCTCTCAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTATTTGGGACAAAGGAAATGTCTGCCAGTGCTGGGGACTCCAATTGTCAGGGCGCGGTTGCTGCTGAGGGCTCAACTGGATTAATCAATGCAACACAACCAGCATGCAGCAATGCTGCATCTGCAGATTCAATGATGAGCACTAAAACTGAACCAATTATTTGTTTTACTGGAAGGCAATCCCAATCGAACATTTCTTTTTCTGGTGCAACTAAAGATGGTGGTGGTGGTGGTGGTGGTGACTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCTCCCTGGTGTCCTCCTTGCCCTGAGAGCTCTATGCAATCTGCTAACCGCAGCACCGCTGTCATGCGTTATAAGGAAAAGAAAAAGACACGAAAGTTTGAAAAGCGAGTAAGGTATGCCTCTCGTAAGGCTAGGGCTGATGTCAGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCCGGTGATATTTATGACTATGACCCGATGAGCCAAACCAGAAGTTACTGA 1248 0.4535 MGYLCDFCGEQRSLVYCRSDAASLCLSCDRNVHSANALSKRHSRTLVCERCNSQPAFIRCAEEKISLCQNCDWLGHGTTASTSGHKRQTINLYSGCPSAAEFSSIWSFFSDIPAMGETCEQELGLMSISENSEKSAWVPPENQNASSSAQATNLPGKDKSWVGTSTMPESSSEPRIMDQPPGPSNACVPKLYCPVKTTPALCEDDDNLYDDFNMDEVDLDLENYEELFGVALSHSEELFENGGIDSLFGTKEMSASAGDSNCQGAVAAEGSTGLINATQPACSNAASADSMMSTKTEPIICFTGRQSQSNISFSGATKDGGGGGGGDYQDCGASSMLLMGEPPWCPPCPESSMQSANRSTAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGDIYDYDPMSQTRSY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01548 415 CDD Bbox1_BBX-like 4 47 - -
Aip07g01548 415 Pfam CCT motif 358 400 IPR010402 GO:0005515
Aip07g01548 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 415 - -
Aip07g01548 415 MobiDBLite consensus disorder prediction 134 181 - -
Aip07g01548 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Aip07g01548 415 CDD Bbox1_BBX-like 47 90 - -
Aip07g01548 415 SMART bboxneu5 48 90 IPR000315 GO:0008270
Aip07g01548 415 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aip07g01548 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 415 - -
Aip07g01548 415 MobiDBLite consensus disorder prediction 134 173 - -
Aip07g01548 415 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aip07g01548 415 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01548 Aip-Chr7 28577258 28583691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01548 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.765 2.43e-146 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aip07g01548 CCT 6.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01548 - - gmx:100783016 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01548 07 28577258 28583691 Aip07g01548 07 28577258 28583691 ECH