Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01546 ATGGGCCTCTCAAGTCTGCCATCGCCATCCGAAGGAGTGCTATGTGCACTTCTTGTTAACACTGTGCTCTCAGTCTCCATATTTAAAGGCATTGTTAGGACAATCCTTCACATTGTTGGCATCCACCTTTCATCATCCTCGGTTTCGCCATCGTCCTCTTCGCCAAATGCCACCTCCCAGAGCCATCAACCATCCGAGTCATTCGAGTTCCTCCTTAGCCCCTCAGAAACATTCATCGAAGAGTTTAGGAGCCGGACGCCTACAATCCGCTTCGACAGCATGTTCTCCTGTGGAAAACCTGAACATGACTGCTGTGTGTGCCTCTCTCAATTTGAGCCGGAATCTGAGATAAACCGCTTGCCCTGCGGCCATCTCTTCCACAAAGTGTGCTTGGAGAAGTGGTTGGATTATTGGAACATCACATGCCCACTTTGCAGGAACCCTTTGATGCCTGAAGACAATGATCCATGGCTCTTAgatctcgccgCTCCAATCTGCGGCCGCTGCTCCAATCCGCCGCCGCTGCTCGTCGTTGTTCGGTGGCTGGATCTCGTCGCTGCTCCTCTGGGTTCGGCAGAAGTGTTCGATGGCGGTGGGTTCTTGTTCGAGGCAAGAACAGGGCCGCCGCTACTCGTCGTCGTTCGGTGGCTGGATCTCGCTGTTGCTCCTCTGGGCTCGGCGGAAGTGCTCAATAGCGGTGGGTTCTGGTTCGAGGCAAGAACAGGGGAAGACTTCAGTGATAAGCCGAGGGATGAGAAGAGGTCACGCTGTGACGGTGGCGCTAGGGTAGCGCAAAGAGAGAAGAAGAAAAGGGTTGTGGCACTGTGA 828 0.5314 MGLSSLPSPSEGVLCALLVNTVLSVSIFKGIVRTILHIVGIHLSSSSVSPSSSSPNATSQSHQPSESFEFLLSPSETFIEEFRSRTPTIRFDSMFSCGKPEHDCCVCLSQFEPESEINRLPCGHLFHKVCLEKWLDYWNITCPLCRNPLMPEDNDPWLLDLAAPICGRCSNPPPLLVVVRWLDLVAAPLGSAEVFDGGGFLFEARTGPPLLVVVRWLDLAVAPLGSAEVLNSGGFWFEARTGEDFSDKPRDEKRSRCDGGARVAQREKKKRVVAL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01546 275 Pfam Ring finger domain 103 146 IPR001841 -
Aip07g01546 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 151 IPR013083 -
Aip07g01546 275 SMART ring_2 104 145 IPR001841 -
Aip07g01546 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 154 - -
Aip07g01546 275 SMART ringv_2 103 146 IPR011016 GO:0008270
Aip07g01546 275 SUPERFAMILY RING/U-box 97 152 - -
Aip07g01546 275 MobiDBLite consensus disorder prediction 245 275 - -
Aip07g01546 275 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Aip07g01546 275 PANTHER - 1 154 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01546 Aip-Chr7 28561584 28565571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01546 1 155 C3H Transcription Factor Family AT2G04240 60.759 8.70e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01546 K16285 - gmx:100786803 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01546 07 28561584 28565571 Aip07g01546 07 28561584 28565571 ECH