Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01463 ATGTCTCCAGCAACTGCAACAAAGAAGAAATTTTCGAAGAAGCAGAGCAATGCAAAGCCACCAAAAGAAGCCATGAAAAAGAAGAGCAAGCTTTTAACCCCCAAGCATGATTCCAGTGCTTCAGAATCCGAATATGAAGAAGAGATTCTGCAGCAGCCACAGAATAAAGATGAAGCACCTGGTGACTTCGATGTTGATTCGGGTTCTGAATCTGAGCTATCTTCTGATGGTGATGGTGATGATCCCTTAGTTGATGATTTCCTCCAAGGATCTGATGACGAAGCGGAAGGTAAAGACTCCGCTTCTGATTCAGGTTCGGGTTTGGATGTTGACTCGGATGACTATGACATTGAAGAGAAGTCGAGAATCATTGATGAGGAAAGGAAGAAGGAAGAAGAAGATGCCGAGGCTGAAATGCAACTCAACATCAAAGAGGAGTCTGATGAGTTTAGATTACCAACCCAAGAGGAACTTGAGGAGGAGAATCTGCGTCCGCCTGATCTTTCCAATCTACAGAGGAGGATTAAAGAGATTGTTCGTGTTCTTTCAAATTTTAAGGCCTTAAAGCAAGAAGGGTCAACGAGGAAGGATTATGTTGAGCAGCTTAAGAAAGACATATGTTCATACTATGGCTACAATGAGTTTCTAATTGGTGCTTTAGTGGAGATGTTTCCCGCTGTTGAACTTATGGAACTAATTGAAGCCTTTGAAAAGCCCAGGCCCATTTGTCTAAGGACTAACACTTTGAAGACACGCAGACGGGATTTGGCAGATGTTTTAATAAATAGAGGAGTAAATCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCGGAGTATATGGCTGGTTTCTACATGCTTCAAAGTGCAAGCTCCTTTCTACCTGTGATGGCCTTAGCTCCTCAAGAGAAGGAAAGGGTTGTTGATATGGCGGCTGCACCTGGAGGTAAAACGACTTATGTAGCTGCTCTTATGAAGAATACAGGAATTGTTTTTGCAAATGAAATGAAGGTATTGCGGCTCAAGTCACTTACTGCAAATTTGCACCGAATGGGTGTGTCAAACACTGTAGTCTGCAATTACGATGGAAGAGAGCTTCCAAAGGTGTTGGGTGTCAATGCTGTTGACAGAGTATTATTGGATGCTCCCTGCAGTGGAACTGGGGTTATATCCAAGGATGAATCAGTTAAAACCTCCAAAAGCTTGGAAGACATACAGAAATGTGCGCATCTGCAGAAGGAACTCATTCTTGCTGCCATTGATATGGTGGATGCTAATTCAAAATCTGGGGGATACATTGTTTATTCCACTTGTTCGATCATGGTTGCTGAGAATGAAGCAGTTATTGACTATGCACTCAAGAAGAGGGATGTTAAGTTGGTTCCCTGTGGACTTGACTTTGGGCGCCCTGGATTCATAAGATTCAGGGAGCAACGGTTTCACCCTTCTTTAGAAAAGACAAGGCGGTTCTATCCTCATGTACACAATATGGATGGGTTCTTTGTCGCAAAGTTGAAAAAAATGAGCAGCAGAAAGCCAGGTTCAAAACCATCAGAACCATCTGAAGAGGAGGAAGAACAATCCAAGCTTGAGAAGGAAGAAGTGGAGGATGAGAAGCCTAGTAATGATGTTAGAGAAAATGGCAAAAAATCTTCTGAATCTAAATCCAAAAAGACAAAGAAAAGGAAGTTTCCATCTAAACCAATTAACGGCATAAAAGAAAATGGGAAAGTAACTTCTGGATCTGGACCAATAAAGAGGCAGAAAAGGAAATTTCCATCTAAGGAGGAAATTTCAAATTCAAGGGAGGAGAAGAGACGCGCGTTGAGAGAAAACAAGCGCAGAACCGCATGCACCGGTCCAAATGAGGAGATTGATGCACCTGTCACCTCTGACACAAGTTTCTGCTTTGGTGGCAGTGATATTGTTTCATGGTCTATTTTCTGGGTGACAAACAAGGACAGCATGGAGGGAGAATCCGCGGTGGACGAATGTTACCGGTCGTTGTCTGCTGAAGAAGAGGGAGGCAATGGAAGCGATGCCTTCGACCCTGGTGGCGACGAATTCGGTGACGACGTTGAGGATGGGGAATTAGGGGTGGAGTCGGATGCAGAGGAGAATTTCGGGGATAGCTTCTTTGACAACTGGGAGGAGAGAGCAGTGGACGGTATTGCGGAGCTGGGGTGTATAAATTTCAAGCAAATCACTGCAAAGGAGATTATGATGTGTCATTTTTCAGATCGATCGGTGGCATTCTTGTTTTACAATTTGTATGCAAAGATGAATGATTTCACTGTGAGGAAGAATAAGACTCGGCGAAATGTGAGGAATGAGGTTACTCAACAAGAATTTGTATGTTTCCAACAGGGGTTCAGAGGAATGGGGTCCGTTAACAACAGCACGCGACGGAAACGTGAGCCGAAGGCGGAGACCAGATGCGGCTGTGAGGCAGAGATGCGCATCCACGTGCACTCCGAAAGTGGTAGATAG 2529 0.4401 MSPATATKKKFSKKQSNAKPPKEAMKKKSKLLTPKHDSSASESEYEEEILQQPQNKDEAPGDFDVDSGSESELSSDGDGDDPLVDDFLQGSDDEAEGKDSASDSGSGLDVDSDDYDIEEKSRIIDEERKKEEEDAEAEMQLNIKEESDEFRLPTQEELEEENLRPPDLSNLQRRIKEIVRVLSNFKALKQEGSTRKDYVEQLKKDICSYYGYNEFLIGALVEMFPAVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYVAALMKNTGIVFANEMKVLRLKSLTANLHRMGVSNTVVCNYDGRELPKVLGVNAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDANSKSGGYIVYSTCSIMVAENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREQRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSSRKPGSKPSEPSEEEEEQSKLEKEEVEDEKPSNDVRENGKKSSESKSKKTKKRKFPSKPINGIKENGKVTSGSGPIKRQKRKFPSKEEISNSREEKRRALRENKRRTACTGPNEEIDAPVTSDTSFCFGGSDIVSWSIFWVTNKDSMEGESAVDECYRSLSAEEEGGNGSDAFDPGGDEFGDDVEDGELGVESDAEENFGDSFFDNWEERAVDGIAELGCINFKQITAKEIMMCHFSDRSVAFLFYNLYAKMNDFTVRKNKTRRNVRNEVTQQEFVCFQQGFRGMGSVNNSTRRKREPKAETRCGCEAEMRIHVHSESGR 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01463 842 Coils Coil 608 628 - -
Aip07g01463 842 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 24 609 IPR023267 GO:0001510
Aip07g01463 842 PANTHER BNACNNG49010D PROTEIN 24 609 - -
Aip07g01463 842 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 223 305 IPR031341 -
Aip07g01463 842 Gene3D Vaccinia Virus protein VP39 308 620 IPR029063 -
Aip07g01463 842 MobiDBLite consensus disorder prediction 115 138 - -
Aip07g01463 842 PRINTS RNA (C5-cytosine) methyltransferase signature 443 459 IPR023267 GO:0001510
Aip07g01463 842 PRINTS RNA (C5-cytosine) methyltransferase signature 321 331 IPR023267 GO:0001510
Aip07g01463 842 PRINTS RNA (C5-cytosine) methyltransferase signature 292 306 IPR023267 GO:0001510
Aip07g01463 842 PRINTS RNA (C5-cytosine) methyltransferase signature 389 401 IPR023267 GO:0001510
Aip07g01463 842 PRINTS RNA (C5-cytosine) methyltransferase signature 503 520 IPR023267 GO:0001510
Aip07g01463 842 MobiDBLite consensus disorder prediction 1 138 - -
Aip07g01463 842 Gene3D Sun protein; domain 3 198 305 - -
Aip07g01463 842 MobiDBLite consensus disorder prediction 683 708 - -
Aip07g01463 842 MobiDBLite consensus disorder prediction 521 638 - -
Aip07g01463 842 MobiDBLite consensus disorder prediction 545 566 - -
Aip07g01463 842 ProSitePatterns NOL1/NOP2/sun family signature. 388 399 IPR018314 GO:0003723|GO:0008168
Aip07g01463 842 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 244 520 IPR011023 GO:0003723|GO:0006396|GO:0008757
Aip07g01463 842 MobiDBLite consensus disorder prediction 16 63 - -
Aip07g01463 842 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 232 521 IPR001678 GO:0008168
Aip07g01463 842 Pfam FAR1 DNA-binding domain 767 839 IPR004330 -
Aip07g01463 842 MobiDBLite consensus disorder prediction 69 90 - -
Aip07g01463 842 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 251 264 IPR023273 GO:0008168
Aip07g01463 842 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 228 240 IPR023273 GO:0008168
Aip07g01463 842 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 195 215 IPR023273 GO:0008168
Aip07g01463 842 MobiDBLite consensus disorder prediction 602 633 - -
Aip07g01463 842 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 204 520 IPR029063 -
Aip07g01463 842 Coils Coil 129 149 - -
Aip07g01463 842 Pfam 16S rRNA methyltransferase RsmB/F 309 519 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01463 Aip-Chr7 25366576 25376378 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip07g01463 Methyltr_RsmB-F 9.3e-73 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01463 K14835 - gmx:100807160 852.047