Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01445 ATGCAAACACAAAACAAGTCATCTAACTCACTGAGTCAACTCGCTCAGAGCATGTTCTCATCCAACAACACCATCATGCTTGCCGCCATTGTTTCTCTTCTCCTTGTAATTCTCTTCGTCCTTCTCCTCCATCTCTATGCCAAATGCTTCCTCTCTCACTCTCACCCACCACCTCAACAACCTCCCCGCCGTCGCCGCCGCCATCGCCGCCGTGCAACTCTCCCCGCCTTCCAGGGTCCACCCCAGTTCCAGTTCCACCACTTGCGCGTGGAAGACTCACCCTTTGCCACCAAAGGACTCGATTCCGCTACGGTTTCAGCGATTCCCATGTTTGTGTACGAAGCAGAGAAGAAGAAGAAAACAGAGCAGGAAGAAGAAGACAGAGAGGAATTAGAATGTGTGATTTGTTTGAGCGGTTTCGAAGAAGGTGAAATGGGAAGAACATTACCAAAATGTGGACACGCTTTTCACGTGGAATGCATTGATATGTGGCTGAGTTCTCATTGTAATTGTCCCATTTGCAGAGCTCCTGTTGTTCATCCGAATGATACAGGTTCTGTTGATGACGAAGATGATGATGATGTGGTTCAGATTGTTATTGGTACTCCGAGTTATGAGATTAGTGAGAGTGAGAATGGGAACAATGATGAGGATAATAATTCAGTTTCAGTTTCAGGTTCAGAAACTTCATATTCTTCTTCTTCATCGTCCTCTTTGTTGTTGGGGTGTTCTTTCAAGAGAATGCTGAGAAAGGTTTTTGTCTCGTGA 768 0.4596 MQTQNKSSNSLSQLAQSMFSSNNTIMLAAIVSLLLVILFVLLLHLYAKCFLSHSHPPPQQPPRRRRRHRRRATLPAFQGPPQFQFHHLRVEDSPFATKGLDSATVSAIPMFVYEAEKKKKTEQEEEDREELECVICLSGFEEGEMGRTLPKCGHAFHVECIDMWLSSHCNCPICRAPVVHPNDTGSVDDEDDDDVVQIVIGTPSYEISESENGNNDEDNNSVSVSGSETSYSSSSSSSLLLGCSFKRMLRKVFVS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01445 255 CDD RING-H2_EL5_like 133 175 - -
Aip07g01445 255 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 254 IPR044675 -
Aip07g01445 255 SMART ring_2 133 174 IPR001841 -
Aip07g01445 255 SUPERFAMILY RING/U-box 121 181 - -
Aip07g01445 255 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Aip07g01445 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 180 IPR013083 -
Aip07g01445 255 MobiDBLite consensus disorder prediction 206 238 - -
Aip07g01445 255 PANTHER - 4 254 - -
Aip07g01445 255 Coils Coil 112 134 - -
Aip07g01445 255 Pfam Ring finger domain 132 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01445 Aip-Chr7 24992194 24993079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01445 19 223 Rapid Response to Elicitors AT3G16720 35.922 5.85e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01445 - - aprc:113874423 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01445 07 24992194 24993079 Aip07g01445 07 24992194 24993079 ECH
Aip01g00374 01 4379060 4379935 Aip07g01445 07 24992194 24993079 PCT