Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01436 ATGACACGTGCAATCCGCAGTCTTCAAACGGCTGTTTTTGTGCCTCTTAAAGCCATAGTTGTTGAGCTTGGTTATGTGGAAACAGTACCAGAAGACCAGGGTGCTTTGGATTTGGTCAGGACAGCATTTGGTAAATCTAATGGAAAAGAGGAACCCCTGAATCATGTTGAAGCAGAGAGACAAAGGAGGAAAAAGCTTAACCAATGGTTCTACGCCTTGAGAGCTGTTGTTCCGAATATATCTAAAATGGACAGGGCATCTCTACTTGGCGATGAACAACCCGTTGTTGCTAAGGGTGTGGAAGAAGAAAAAGAAGATGAACAGCTGGTTGCTGCTAAAGAAGAAGAAGAAGAGAAGGCTACTAATAATAATAACAATTATTACATGATGGTTAAGGAAAGTAGTATTAGTATAGATTGGGAGGTGAGGCCTGGTGGAATGCTTGTTCAGAAGAGACAAGAAAAAATTGTTGACTCTTCTTCTTCTTCTTCTTGTTCAAGTCCAATGATCAAAGTTAAGGTCTCTCATGGTTGTAATCACCATGAGGTTAATGTTCCTTCACAATCCACTTTTGGGCATTTAAAAGGTGTCCTTGCATCTGAGACTGGCCTAGAACCTAAGGAACAAAGGCTAATATTTACATATTGTTAG 651 0.404 MTRAIRSLQTAVFVPLKAIVVELGYVETVPEDQGALDLVRTAFGKSNGKEEPLNHVEAERQRRKKLNQWFYALRAVVPNISKMDRASLLGDEQPVVAKGVEEEKEDEQLVAAKEEEEEKATNNNNNYYMMVKESSISIDWEVRPGGMLVQKRQEKIVDSSSSSSCSSPMIKVKVSHGCNHHEVNVPSQSTFGHLKGVLASETGLEPKEQRLIFTYC 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01436 216 PANTHER MYC 46 91 IPR045084 GO:0003700|GO:0006355
Aip07g01436 216 PANTHER MYC 7 45 IPR045084 GO:0003700|GO:0006355
Aip07g01436 216 Gene3D - 44 92 IPR036638 GO:0046983
Aip07g01436 216 PANTHER TRANSCRIPTION FACTOR BHLH3 7 45 - -
Aip07g01436 216 Pfam Ubiquitin family 170 213 IPR000626 GO:0005515
Aip07g01436 216 ProSiteProfiles Ubiquitin domain profile. 170 213 IPR000626 GO:0005515
Aip07g01436 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 90 IPR036638 GO:0046983
Aip07g01436 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
Aip07g01436 216 Pfam Helix-loop-helix DNA-binding domain 54 88 IPR011598 GO:0046983
Aip07g01436 216 Gene3D - 168 215 - -
Aip07g01436 216 SMART finulus 56 105 IPR011598 GO:0046983
Aip07g01436 216 PANTHER TRANSCRIPTION FACTOR BHLH3 46 91 - -
Aip07g01436 216 Coils Coil 97 117 - -
Aip07g01436 216 SUPERFAMILY Ubiquitin-like 156 213 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01436 Aip-Chr7 24717472 24722344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01436 16 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 63.158 3.47e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip07g01436 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01436 - - ahf:112702785 171.4