Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01388 ATGGATGAACATTTTGATTTAGTATCAGATGTGAACGCCAAAAAACTTGCATGGAATTTCAAAGTATTTGTAATAAGGGTGTGGACAACTCCAAACAAGTTCAATGTCAACGAGATTGGCTCCATCGAAATGGTACTTCAAGATAAACAGGGTGGCAGGATTTATGCAACCATACCAAGATCACTGGCAAAGAAATACATTAGTGTTATTCTTGAGTTCCACATGTATACTATGAGTAACTTCATAGTTGTTGACAACATGACCAAGAAAAAAAACGGTGTTAGTAGGTGGGTACTTGTGTTTTCACATAGAACAAGGGTTGAACATATAGAGAATCCAACTTTTCCTTTGGAAGCATTTCGATTTAGGAACCTTGCAGAGATGCATACAGTCGAGAAAGTAGAGGATCTTGAACTGTTTGATATAATTGGAGAAATTGTTGGAAAGGAAGATCCAAGAGAATTAGTAACTAGCAAGGGAATAGAGACTAAGCGCTTGGTTGTTATTGTGGAAGACTTGGACCATCAATCGACCCAAAGTTCATGGGTTGGGACTGATGAGCTCAACAATGGCACGGCTATTGTGAAAACGATCGAACAAGTTTTGAAGTCTGTTGAGGAGGGGCCAACCTGGATTGCAGGTACTATTGTCTCAATCAATGCTGGGAAGGATGATTGGTTTTATAAAGCATGCAGGCGATGTCCAAAAAAGGTGGAAACTCCTATTGGGAATAGGTACGAATGTGCAAAGTGTGGCCACACCCATGGTTGTGCAGCACTCAGATATAAGGTTGAGGTCATGGTCTTTGATGGTACCGGAAGCATTACATTGTTGTTGTGGGACAGAGAAACCAACCAGCTGTGTGGGAAAACAGCTGAAAAAATTGTAGAAGAGGATGATGCTAAAGAGGATGAATACCCTAAAAGTCTAGACAACATGATGGATAGAATGGTGCTTTTCAAAATCAATGTGAAAAGTGGTAACATAAAACACTATGATCAGATTTACACAGTCATGAAAGTGTGTGATGATGAAGAAACAGTTGCAAAGAACAAGCCTCAGCAAATGGACGTTAGCACATCTATGAACATCACTGAGAATAGAGGTAGCAACACGCTGGAGATGTCCGGACATGTTGTTAATCTTAAGAATGATAATGATCCTCAGCTTACTGTGGATTCTATGGAAGACTGTGTTGAAAGTCTCAAATACAAAACACCAGCTAAAAGAATTGCCGGCAGTTTGAAGTATGGTTCGGTTGTTGATGAAGAATGCCAGCTTTCAACAAATAGGTTCACCCGAAAGGGAGGGAAAAAACTAAAGTCTCAAACATCTGAGGCGGATAATTAA 1350 0.3993 MDEHFDLVSDVNAKKLAWNFKVFVIRVWTTPNKFNVNEIGSIEMVLQDKQGGRIYATIPRSLAKKYISVILEFHMYTMSNFIVVDNMTKKKNGVSRWVLVFSHRTRVEHIENPTFPLEAFRFRNLAEMHTVEKVEDLELFDIIGEIVGKEDPRELVTSKGIETKRLVVIVEDLDHQSTQSSWVGTDELNNGTAIVKTIEQVLKSVEEGPTWIAGTIVSINAGKDDWFYKACRRCPKKVETPIGNRYECAKCGHTHGCAALRYKVEVMVFDGTGSITLLLWDRETNQLCGKTAEKIVEEDDAKEDEYPKSLDNMMDRMVLFKINVKSGNIKHYDQIYTVMKVCDDEETVAKNKPQQMDVSTSMNITENRGSNTLEMSGHVVNLKNDNDPQLTVDSMEDCVESLKYKTPAKRIAGSLKYGSVVDEECQLSTNRFTRKGGKKLKSQTSEADN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01388 449 CDD RPA1_DBD_A_like 21 107 - -
Aip07g01388 449 Gene3D - 179 354 IPR012340 -
Aip07g01388 449 Gene3D - 7 112 IPR012340 -
Aip07g01388 449 CDD RPA1_DBD_C 195 341 IPR013955 -
Aip07g01388 449 SUPERFAMILY Nucleic acid-binding proteins 196 343 IPR012340 -
Aip07g01388 449 Pfam Replication factor-A C terminal domain 214 341 IPR013955 -
Aip07g01388 449 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Aip07g01388 449 PANTHER BNAC01G35430D PROTEIN 216 367 - -
Aip07g01388 449 PANTHER BNAC01G35430D PROTEIN 7 147 - -
Aip07g01388 449 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Aip07g01388 449 PANTHER REPLICATION FACTOR A 1, RFA1 216 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip07g01388 449 PANTHER REPLICATION FACTOR A 1, RFA1 7 147 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01388 Aip-Chr7 23474291 23476370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01388 206 324 Core DNA Replication Machinery Family AT5G08020 28.455 1.40e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01388 - - aip:107633426 449.129