Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01279 ATGACGAAGATGAAGACTAGAAGACGAGATGCACGACTGCACGAGGAACGACAGCTGGAAGGCGAGATGAAAGAGAAAACGATAACACCACCTGGAAGCGTGATGCCACGCCGGACTTATAAACGTCATCATTTTCTTTCTAAAGCTGAAGATGAGAGTGAACTTGAAAAAGTTCTTCAGTTTTTGCCCTCTCTTCCTCTTCTTCTCCTTGAATTTTACCATAATGAACTCTCCTCTCCTCTCGACAATACCACTTCCGTGAAATGTAGAAGCCATTTTAGAAGTCAACGTCAAAGGATTGAAAGGTCCCAACATAACTCTCCGATTCTCATCATCTTCTTCTTCTTGTTCCCTACCGCGTCCCTTTCATTTCCAGCTGAAACAAAAGCCTCTTCCGCCGGTGTCTGCGGTGTTTTCAACGCTTCTTTCTTTGCTTCATCAAATATTTCCGGTACTATGGACATATCTTTGTTAAATGTGCTCTCCAATGGCATATCCTCATTTTTGCATCCATCATTTTCTGGAAACATGAACTCAAAACCTGTATCAATGTATTGCCAAAGTGCAGAGCAGACACTTAAGTTGTTGAAGCCAATTATCGACACAACTGTTCATTCTGATATATCTGCTGATGAAGAGCTTAGAAAGTTATTTGAGGAACTTGGTCAGTCTGTTGATGAGTTGAGGGAGCTTTTCGAGAATTGGCATCCGCTATCCAGTAAATTTTACTTTGTGATGCAAGCTGAACCGTTGATAGCTAGAATTCAGTCTATAGGGTTCAATATTTTGCAGAAGCTGAAGGCTTCACAGCAATGTCTACCTGATGATTTGGGGCATGATATGACATCAATCATTAAGGAAGCTATAAATGAACAACCGGAAGGCGAAGGACCAAGTTCTGAGATTCTAGCAAATATTGCCGAGATCCTCGACTTAAGGTCTAATCAAGATGTTTTGATTGAAGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCTGAGTATATTGATCGAATGATCTCTGTTGTGACTCGAATGCATGAGCGAATCATCATTCTCAAGCAAGCTCAGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGTCATCCGGGCAAACCTATGAGCGAACTTTCATCAAGGACTGGATTGATCTTGGGCTCATGGTTTGTCCAAAGACTCGTCAGACTCTGGTTCATTCCAACCTAATACCTAACTACACTGTAAAAGCATTAATTGTTAATTGGTGCGAAACAAACAATGTGATACTAGTTGATCCAGTAAAGTCCACAAACATAAATCAACTGTCTCTCCTTCATGGATCTATTGAGTCTGGTACAATCAAGGAATCAACTGTTAGAACTTCTTTCAGTGCAAACCATCAAGAGGAAACATCACCATTCCATCCTAGTTCAACTCCAGAAGATTCCTTTAGTGGCGTGGATAATGCACAGCATGTGGATCCTGTAAGAATATCATCTGCAGTTTCAGATGACAGGTCTGCTAGCTCGGACGAAGAAAGTGTGGATTTAGTTTCACAATCATCAACTTCACCATCTAGAAGGGAAGCTTCAAATGCCTTGAGATCAGAGCAATCTCAAAACCATGTAAGAACTTATTCTGATTCCAGTGAACACTCTAGTGAAAATTTTCATCAAGGCATACAGGGTGATAGCAACAATGGTCCTCTTCCATCATCAACCAGTCCAATCCACAGTCGAGATGCTTCTGAGGAATTAGCTCCCGAGCTGGATGCTGGTGCCAGGCCAATTCCACAAGGCGAGCCCGAGTTTTCACCACAACTTGTGCAGCCAAGGTTTCCAAGAAAAACTGTATTACAACGGCCGTCAGAGAGGTTTGTCCCTAGGATAGTTTCTTCTCCTCCTGTTGAACCAAGAGGCGATGGATCCGGTATTGAATCCAGGGTTAAGGAGTTGATTGAGCTCTTGAAGAGCTCTTCTCTTGATACTCAAAGGGAAGCCACAGGAGAACTCCGCCTTCTTGCTAAGCACAACATGGATAACAGAATTGTGATTGCAAACTGTGGAGCCATTCCCTTGTTGGTCAATTTGCTTCTATCAACCGATACAACAATCCAAGAAAACTCTGTTACAGCACTTCTTAACTTATCAATCAATGACAACAACAAAAATGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTCCTTGAGACAGGTAGTGCAGAAGCAAAGGAGAACTCGGCGGCTACTCTTTACAGCTTATCAGTGGTTGAGGAGAACAAGATCAGGATAGGGAGGGCCGGGGCTATTAAACCTCTGGTTGAGTTATTAAGTAATGGAACTCCAAGGGGTAAGAAAGATGCTTCCACTGCTTTATTTAACTTGTCAATATTTCACGAAAACAAGGATCGAATTGTAGAAGCTGGTGCTGTGAAGCACCTTGTAGATTTGATGGACCCTGCAGCCGGAATGGTCGATAAGGCTGTGGCTGTTCTAGCAAATCTGGCCACAATACCGGAAGGAAGAACTGCCATTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTATGCGTAAACCATCCGAGATATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTCGCTTTATCAAGATCAGGCACCGCAAGGGCTAAAGAGAAGGCCCTGTCTCTTCTGAATCATTTTAGAGATCGAAGGCATGGTGGTGCTGTGAGGGGCTGA 2847 0.4317 MTKMKTRRRDARLHEERQLEGEMKEKTITPPGSVMPRRTYKRHHFLSKAEDESELEKVLQFLPSLPLLLLEFYHNELSSPLDNTTSVKCRSHFRSQRQRIERSQHNSPILIIFFFLFPTASLSFPAETKASSAGVCGVFNASFFASSNISGTMDISLLNVLSNGISSFLHPSFSGNMNSKPVSMYCQSAEQTLKLLKPIIDTTVHSDISADEELRKLFEELGQSVDELRELFENWHPLSSKFYFVMQAEPLIARIQSIGFNILQKLKASQQCLPDDLGHDMTSIIKEAINEQPEGEGPSSEILANIAEILDLRSNQDVLIEAVALERLKENAEQTENIAEAEYIDRMISVVTRMHERIIILKQAQSSIPDSVPADFCCPLSLELMTDPVIVSSGQTYERTFIKDWIDLGLMVCPKTRQTLVHSNLIPNYTVKALIVNWCETNNVILVDPVKSTNINQLSLLHGSIESGTIKESTVRTSFSANHQEETSPFHPSSTPEDSFSGVDNAQHVDPVRISSAVSDDRSASSDEESVDLVSQSSTSPSRREASNALRSEQSQNHVRTYSDSSEHSSENFHQGIQGDSNNGPLPSSTSPIHSRDASEELAPELDAGARPIPQGEPEFSPQLVQPRFPRKTVLQRPSERFVPRIVSSPPVEPRGDGSGIESRVKELIELLKSSSLDTQREATGELRLLAKHNMDNRIVIANCGAIPLLVNLLLSTDTTIQENSVTALLNLSINDNNKNAIANAGAIEPLIHVLETGSAEAKENSAATLYSLSVVEENKIRIGRAGAIKPLVELLSNGTPRGKKDASTALFNLSIFHENKDRIVEAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPEGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLCVNHPRYLNMVLQEGAVPPLVALSRSGTARAKEKALSLLNHFRDRRHGGAVRG 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01279 948 ProSiteProfiles U-box domain profile. 371 445 IPR003613 GO:0004842|GO:0016567
Aip07g01279 948 MobiDBLite consensus disorder prediction 1 35 - -
Aip07g01279 948 Pfam U-box domain 372 442 IPR003613 GO:0004842|GO:0016567
Aip07g01279 948 MobiDBLite consensus disorder prediction 529 596 - -
Aip07g01279 948 MobiDBLite consensus disorder prediction 8 24 - -
Aip07g01279 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 746 788 IPR000225 GO:0005515
Aip07g01279 948 Coils Coil 315 345 - -
Aip07g01279 948 Gene3D - 660 943 IPR011989 -
Aip07g01279 948 MobiDBLite consensus disorder prediction 475 502 - -
Aip07g01279 948 SUPERFAMILY RING/U-box 362 449 - -
Aip07g01279 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 447 IPR013083 -
Aip07g01279 948 PANTHER U BOX DOMAIN-CONTAINING 625 943 - -
Aip07g01279 948 PANTHER U BOX DOMAIN-CONTAINING 159 483 - -
Aip07g01279 948 MobiDBLite consensus disorder prediction 475 660 - -
Aip07g01279 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 663 705 IPR000225 GO:0005515
Aip07g01279 948 SUPERFAMILY ARM repeat 665 937 IPR016024 -
Aip07g01279 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 705 747 IPR000225 GO:0005515
Aip07g01279 948 SMART Ubox_2 375 438 IPR003613 GO:0004842|GO:0016567
Aip07g01279 948 CDD RING-Ubox_PUB 376 418 IPR045210 -
Aip07g01279 948 Pfam Armadillo/beta-catenin-like repeat 819 855 IPR000225 GO:0005515
Aip07g01279 948 Pfam Armadillo/beta-catenin-like repeat 778 815 IPR000225 GO:0005515
Aip07g01279 948 Pfam Armadillo/beta-catenin-like repeat 735 774 IPR000225 GO:0005515
Aip07g01279 948 Pfam Armadillo/beta-catenin-like repeat 696 733 IPR000225 GO:0005515
Aip07g01279 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 787 829 IPR000225 GO:0005515
Aip07g01279 948 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 828 869 IPR000225 GO:0005515
Aip07g01279 948 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 625 943 - -
Aip07g01279 948 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 159 483 - -
Aip07g01279 948 SMART arm_5 735 775 IPR000225 GO:0005515
Aip07g01279 948 SMART arm_5 857 897 IPR000225 GO:0005515
Aip07g01279 948 SMART arm_5 694 734 IPR000225 GO:0005515
Aip07g01279 948 SMART arm_5 776 816 IPR000225 GO:0005515
Aip07g01279 948 SMART arm_5 817 856 IPR000225 GO:0005515
Aip07g01279 948 SMART arm_5 898 939 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01279 Aip-Chr7 20491215 20499207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01279 332 948 U-box Gene Family AT2G23140 59.380 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01279 - - adu:107458158 1479.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00282 01 3009075 3016253 Aip07g01279 07 20491215 20499207 PCT