Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01249 ATGGCACTTTTTACTACTACACTTCTAGTTGCTCTCATTGGTTTACTTATTGGTATCAATCTTCAAGGTGCCATTGCTGACTATGGTGGTAGTTGGCAGGGTGGACATGCCACTTTCTATGGTGGTGGTGATGCTTCCGGCACAATGGGAGGAGCATGTGGTTATGGAAATTTGTATAGCCAAGGATATGGAACCAACACTGCAGCACTAAGCACAGCATTGTTCAACAATGGATTGAGCTGTGGTGCTTGCTATGAGATGAGGTGTGATGATGATCCAAGATGGTGCAAACCTGCCACCATTATTGTCACTGCTACAAACTTTTGTCCCCCAAATTTTGCTTTGGCTAACAACAATGGTGGATGGTGCAACCCTCCCCTTCAACACTTTGACATGGCTGAACCTGCATTCCTTCAAATTGCTGAGTATAGAGCTGGAATTGTGCCTGTTGCATTTAGAAGAGTGCCTTGTATGAAAAAGGGAGGAATAAGGTTCACCATCAATGGGCATTCATACTTCAACCTAGTTTTGATCACAAACGTCGCGGGTGCAGGGGACATCCATGCAGTCTCAATCAAAGGGTCAAGAACTGGCTGGCAAACAATGTCAAGGAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTTAATGGACAGAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACCGTCACAAGCTTCAACGTGGCACCAGCTAACTGGCAGTTTGGTCAAACTTTCCAAGGTGCTCAGTTTTAA 765 0.4562 MALFTTTLLVALIGLLIGINLQGAIADYGGSWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCDDDPRWCKPATIIVTATNFCPPNFALANNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLITNVAGAGDIHAVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSFNVAPANWQFGQTFQGAQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01249 254 Gene3D - 162 254 IPR036749 -
Aip07g01249 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Aip07g01249 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Aip07g01249 254 Gene3D - 20 158 IPR036908 -
Aip07g01249 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Aip07g01249 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Aip07g01249 254 SMART dpbb_1 67 152 IPR007112 -
Aip07g01249 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Aip07g01249 254 PANTHER EXPANSIN-A15 10 254 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Aip07g01249 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Aip07g01249 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Aip07g01249 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Aip07g01249 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Aip07g01249 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Aip07g01249 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Aip07g01249 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Aip07g01249 254 PANTHER EXPANSIN 10 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01249 Aip-Chr7 19636461 19638786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01249 8 254 Expansin Gene Family AT2G40610 80.242 2.87e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01249 - - gmx:100816848 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01249 07 19636461 19638786 Aip07g01249 07 19636461 19638786 ECH
Aip07g01249 07 19636461 19638786 Aip10g02185 10 97687434 97689343 ECH
Aip07g01249 07 19636461 19638786 Aip01g00270 01 2897635 2903629 ECH
Aip01g00270 01 2897635 2903629 Aip07g01249 07 19636461 19638786 PCT