Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01248 ATGGCTAGATCCAAAGTGAAGCTTGCATACATAACCAACGATGCTGCAAGGAGGGTTACATACAAGAAGAGAAAAAGAGGGATGATGAAGAAAATTAGTGAACTAAGCACCCTTTGTGGGGTTGATGCCTGTGCCATAGTGTACAATTCACGTCAAGACGCTCATCCTCTTGACGAGCCCGAGGTTTGGCCCTCCCGCATGGGAGTTGAAAGGGTGATTGAGAAATTCCGGCAAATGCCAGAAATTGATCAAAACAGGAAGAGGATGGATCATGCGGATTACTTGACTCTGAGGATCGCTAAAGAGAAGGAGAAACTGAAGAAGAAAAGGCATGACAACAACGAGAAGGAGTTCCAGCTTCGCATGCATGATTTCATGCTAAGAAACAGGCTTCCAGAGAATCTGAGCTTCTTTGATTTGAATAACTTGGCTTATCATACTGACATGAAGCTTAGGGAGATCGACATGCGGTTGCAGATGCTTCTGGAAAAAGAGAACAAGGAGATGATGATGGATTTCGCGTCGTGTCCATCGTCACCAGCGATTCATGGTCCTCCCCTTGAGAGTGGAGAGTCTAGTAGGAAGAACATGAACCATTTTTCATTTATGGAGGAAAACAACCACAACAACTACAATAGTGGTTTTGAGATGATTCTTGGAAATGCAGGAATTAATTAA 678 0.4366 MARSKVKLAYITNDAARRVTYKKRKRGMMKKISELSTLCGVDACAIVYNSRQDAHPLDEPEVWPSRMGVERVIEKFRQMPEIDQNRKRMDHADYLTLRIAKEKEKLKKKRHDNNEKEFQLRMHDFMLRNRLPENLSFFDLNNLAYHTDMKLREIDMRLQMLLEKENKEMMMDFASCPSSPAIHGPPLESGESSRKNMNHFSFMEENNHNNYNSGFEMILGNAGIN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01248 225 SUPERFAMILY SRF-like 3 98 IPR036879 GO:0003677|GO:0046983
Aip07g01248 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip07g01248 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Aip07g01248 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Aip07g01248 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip07g01248 225 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aip07g01248 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip07g01248 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip07g01248 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip07g01248 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 210 - -
Aip07g01248 225 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01248 Aip-Chr7 19593547 19594979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01248 1 161 Type I MADS-box Gene Family AT5G48670 46.296 1.20e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip07g01248 SRF-TF 3.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01248 - - aip:107606857 437.187