Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01179 ATGAAGCTTTCAACATCAGGGTTGCCTCAGCAGGGACAACATGAAGGAGGGGAGAAGAAATGCTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCATTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACCGAGAAGTTGATGGCCACATACCAAATTACCCGAGCTTGCCGCCCCAATTGATTTGCCAACTTCACAATGTTACGATGCATGCAGATGTTGAAACAGATGAAGTTTATGCCCAAATGACACTGCAGCCGTTGACTCCGCAAGAGCAGAAGGATACCTTTCTTCCCATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACCTTAACGGCTAGTGACACCAGCACACATGGAGGGTTTTCCGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCGCCTGCTCAAGAATTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAATTTCGTCATATTTTTAGAGGGCAGCCAAAGAGGCACCTTCTTACTACTGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCAGGAGATTCTGTGCTTTTCATATGGAACGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCTTCGTCAGTTCTATCCAGTGACAGTATGCATATTGGCCTTCTGGCAGCTGCTGCCCATGCTGCAGCAACTAATAGTTGTTTCACAGTGTTCTATAATCCAAGGTTGGCTAGTCCATCCGAGTTTGTCATACCACTTTCAAAGTATATCAAAGCTGTATACCATACCCGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGGAGGTACATGGGTACAATAACTGGAATAAGTGACTTGGATCCAGTTCGATGGCCAAATTCTCATTGGCGATCTGTAAAGGTTGGTTGGGATGAATCCACAGCAGGAGATAGGCAGCCACGAGTATCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCACTATTCCCACTCAGATTGAAACGTCCATGGCATCCCGGCACCTCATCTTTTCTTGATGGCAGAGATGATGCAACTAATGGGCTAATGTGGCTGAGAGGTGGAGCTGGCGACCAAGGTCTGAATTCCCTCAATTTTCAAACTGTCGGCATGCTGCCATGGATGCAGCAGAGGCTTGATCCGGCTTTGCTTGGAAATGATCACAATCAGCAATACCAAGCAATGTTGGCAGCTGGTTTGCAAAACATGGGGAGTGGAGAACTCTTGAGGCAACAAATGATGAATTTCCAACAGCCTTTCAATTATCTCCAGCAACCAGGAAATGTCAACACTCCTATCCAGCTTCAGCAGCAGCAAACAATTCAGCAATCAGTGACTTCTAATATCTTGCAGCAACAAGCCCCGGTATTGACAGAGAACTTGTCTCAGCAGCTCTTTCAGAAATCGAACAACCGAGAAGACCATGCGCAGCAGCAGCATCAGCATCAGCAGCACACTTATCAGGATGCACTTTTAGTTCAAGGTGACCAGCTCCACCAAAGGCAACACTCTAGCTTGCCTTCACCATCGTACTCGAAACCTGAGTTTGTAGATGGCAGCATGAAGTTTGAAGGATCAGGTTCGCCAGGACAGAACATGCTTGGTTCACTTTGCCCTGAAGGGAGCAGCAATCTCTTGAATCTATCTAGAGGTGGTCAGTCTATACCAACCGAACAGTTGCCCCAACAATCATGGCCCCCAAAGTATACACCTCTTCAGGTCAATGCTTTCAGCAACTCAATGTCACACGTGCAATATTCTGGAAAAGATATTGCAGTGGCATCACCACATCGTAATTCAGATGCTCAGAACCCGACTCTCTTTGGAGTCAATATCGATTCATCTGGTCTTCTACTCCCCACCACTGTTCCCCATTACACAACTTCATCTGCTGATACCGATGCTTCAACAATGCCGTTAGGGGATTCTGGATTCCAGGGCCCTCTATATGGTTGCATGCAAGATTCATCCGAGTTAATGCAAAGTGCGGGACAAGTTGACCCCCAAAACCAGACACCAACATTTGTCAAGGTTTGA 2184 0.4657 MKLSTSGLPQQGQHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRLASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDDATNGLMWLRGGAGDQGLNSLNFQTVGMLPWMQQRLDPALLGNDHNQQYQAMLAAGLQNMGSGELLRQQMMNFQQPFNYLQQPGNVNTPIQLQQQQTIQQSVTSNILQQQAPVLTENLSQQLFQKSNNREDHAQQQHQHQQHTYQDALLVQGDQLHQRQHSSLPSPSYSKPEFVDGSMKFEGSGSPGQNMLGSLCPEGSSNLLNLSRGGQSIPTEQLPQQSWPPKYTPLQVNAFSNSMSHVQYSGKDIAVASPHRNSDAQNPTLFGVNIDSSGLLLPTTVPHYTTSSADTDASTMPLGDSGFQGPLYGCMQDSSELMQSAGQVDPQNQTPTFVKV 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01179 727 SUPERFAMILY DNA-binding pseudobarrel domain 113 258 IPR015300 -
Aip07g01179 727 SMART B3_2 129 231 IPR003340 GO:0003677
Aip07g01179 727 PANTHER AUXIN RESPONSE FACTOR 1 727 - -
Aip07g01179 727 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Aip07g01179 727 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Aip07g01179 727 CDD B3_DNA 128 229 IPR003340 GO:0003677
Aip07g01179 727 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 727 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip07g01179 727 Pfam Auxin response factor 255 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip07g01179 727 Gene3D - 294 366 - -
Aip07g01179 727 Gene3D - 127 230 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01179 Aip-Chr7 17210838 17217248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01179 99 727 B3 DNA Binding Superfamily AT5G37020 66.667 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip07g01179 B3 5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01179 - - adu:107458034 1452.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01179 07 17210838 17217248 Aip07g01179 07 17210838 17217248 ECH