Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01162 ATGCTACCTAGGACAAGTATTGATGGTTTTCGTGTTAGTGTGTCAAGTACACCTAGCTGTTCAAGTGGGGGATCGGGACCAGAGGACATCGAGTCTCTAGGTGATCTTTATATATGGGGACAAATTTGGGCAGATGTTTCACCTAATAGTTTTGGGACTCAGCTCCCTCCCATGACTGATGTTTTGCTTCCTAAACCGTTAGAGACAAATATTGTTTTTGATGTTCAACAGATTGCATCTGGTGTCCACCACATTGCTTTAGTTACAAGGCAAGATGAGCTATATTCTTGGGGTGATGGTGCATATAATGTTGGACTTCTTGGCCATGGTTCGGATTCTAGCCATTGGATACCAAAGAGAGTTAGTGGCCCTCTAGAAGGACATCAAGTTATATCTGTTGCGTGTGGCACATGGCAGTCGGCATTGGCAACTGCCAATGGAAAACCTTTTACGTTCGGTGATGGAACATTTGGTGTCTTAGCTATTGTAGAGGTAACACTTCTGTCTAGTTCAAATGTTTCATCAAGGAAGCTCTTCACTTGGGGTGATGGTGATAAGTATCATTTGGGGCATGGAAACAAGGAAACATACCTTCAACCGACTTGTGTCTTATCTCTTATAGAATTAAATTTCCACCATATAGCATGTGGAAACACTATGACTGTTGCCCTTACTACATCGGGTCATATTTTCACTATGGGAGGCACTGAACATGGTCAATTAGGAAATCCTTTGTCCGATGAAAAAGTACCAATGCTAGTACAAGATAAGTTGGTAGGTGAGTATGTTGAGGAAATATCATGTGGATCTCATCATGTGGCTGTATTGACATCAAGAAGTGAACTATATACATGGGGGAAAAGTGCCAATAGAAGATTGGGACATGGAGACACAGAAGATAGGAAGGGTTCAACAATAGTGGAAGCCTTGAAAGAAAGGCATGTAAAAAACATTTCGTGTGGGTCGAAGTTTACAGCTTGCATATGCATCCATAAACGGGTTTCGGGAGTTGACCAATCTAGTTGTACCGCATGTAGGCAACCATTTGGATTTACTAGAAAAAGGCACAATTGTTATAATTGTGGGTTAGTGCATTGCCATGGTTGTAGTTCAAAAAAGGCATTGAAGGCAATGTTGGCTCCAACACCCGAAAAACCTCATCGTGTGTGTGATTCTTGTTATACTAAGATTAAAAATGTTGAGTCGAATTCTGGTGCCATTTTTAATAGGAGAGCTACTACTCCACCTCGTACTTCTATAGATGGAAGGGAAAGATTTACCCTGGGAGAAATAAGATCTTCAAGAACTCTCTTCCCCTTCTCAAGAATTCACAAGACTACTACAGAGCAAGTTGTTCAGGTTCCATCACTAGTGCAACTGAAAGATGTTGCATTCTTAAGTTCAACAGGTTCAATAATGCAAAATCTTTTGAAGCCTACCATCGCTGCCATACCTCCAACTCCAAGTCCACCACCAACTCCACCACTCATTTCAAGGCCCGCATCCCCGAAAACAAATGAGCTTAAGAATCAAGAAGTGTCAAAATTGCAGAAACAAATTCAAAGTTTGAAACAGAAAAGTGATATGAAAGATGTGGAAAATCAAAAGCTTTGCCAACATATTAAGGAAGCTACAATATTGGCAGCAGATGAGTCTTCTAAGCATAAAGCAATGCTAGAAATTTTTGAGTGTACTATTATTCAGTTGAAGCAAATGGCTGAGAAGTTGTCACCAGAGATTTCAGAAACTGAAAATTTGAGAATTGCACTTACTCAAGCTGAAGATTTTCTGAAAGAAAACTCGACATCTAAAACATTTTCCGTGCTATCAATATCAGAGTCTACTCGACAAAATGCACCTGATCCTGCCACAGATATTGGGGATTCAAAAATGCAAGAGCACAATACAGAAGAAAATCATGAAGCGGCGGCTTCGGACCCATCGCATGATGAGGGGAATATCCTTCAAGAAAGAAATAGATCATCTGTATTCGATAATAGAACAGCAGTGCAACCACAAAGCTCCGAGGAGACGTCAAGGTTGGCAAGAGATGGAGAAACACAAGTTATTGAACAATTTGAGCCTGGTGTTTACGTGACATTAATAGTAAGGCCTAATGGTATCAAAATTTTTAGGAGAGTTAGATTCAGCAAGCGAAGGTTTCATGAGCAACAAGCAGAAGAATGGTGGAACATAAATAAAGAGAGGGTACTTCAGAGATATGGTCAACAAACTAGAAGTGACGCTAATGCATCATCTAGCACCCCAGCACGGCGGCACCACCTATTGAAGAAAATATTGAGGCAGCACCTACCTAATTAG 2322 0.4074 MLPRTSIDGFRVSVSSTPSCSSGGSGPEDIESLGDLYIWGQIWADVSPNSFGTQLPPMTDVLLPKPLETNIVFDVQQIASGVHHIALVTRQDELYSWGDGAYNVGLLGHGSDSSHWIPKRVSGPLEGHQVISVACGTWQSALATANGKPFTFGDGTFGVLAIVEVTLLSSSNVSSRKLFTWGDGDKYHLGHGNKETYLQPTCVLSLIELNFHHIACGNTMTVALTTSGHIFTMGGTEHGQLGNPLSDEKVPMLVQDKLVGEYVEEISCGSHHVAVLTSRSELYTWGKSANRRLGHGDTEDRKGSTIVEALKERHVKNISCGSKFTACICIHKRVSGVDQSSCTACRQPFGFTRKRHNCYNCGLVHCHGCSSKKALKAMLAPTPEKPHRVCDSCYTKIKNVESNSGAIFNRRATTPPRTSIDGRERFTLGEIRSSRTLFPFSRIHKTTTEQVVQVPSLVQLKDVAFLSSTGSIMQNLLKPTIAAIPPTPSPPPTPPLISRPASPKTNELKNQEVSKLQKQIQSLKQKSDMKDVENQKLCQHIKEATILAADESSKHKAMLEIFECTIIQLKQMAEKLSPEISETENLRIALTQAEDFLKENSTSKTFSVLSISESTRQNAPDPATDIGDSKMQEHNTEENHEAAASDPSHDEGNILQERNRSSVFDNRTAVQPQSSEETSRLARDGETQVIEQFEPGVYVTLIVRPNGIKIFRRVRFSKRRFHEQQAEEWWNINKERVLQRYGQQTRSDANASSSTPARRHHLLKKILRQHLPN 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01162 773 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 78 88 IPR000408 -
Aip07g01162 773 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 161 741 - -
Aip07g01162 773 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 3 95 - -
Aip07g01162 773 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 92 160 - -
Aip07g01162 773 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 92 160 - -
Aip07g01162 773 SUPERFAMILY FYVE/PHD zinc finger 338 404 IPR011011 -
Aip07g01162 773 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 161 741 - -
Aip07g01162 773 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 3 95 - -
Aip07g01162 773 MobiDBLite consensus disorder prediction 608 683 - -
Aip07g01162 773 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 92 146 IPR000408 -
Aip07g01162 773 SMART fyve_4 331 399 IPR000306 GO:0046872
Aip07g01162 773 Pfam Transcription factor regulating root and shoot growth via Pin3 687 741 IPR013591 -
Aip07g01162 773 MobiDBLite consensus disorder prediction 503 523 - -
Aip07g01162 773 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 336 398 IPR017455 -
Aip07g01162 773 Pfam Regulator of chromosome condensation (RCC1) repeat 227 276 IPR000408 -
Aip07g01162 773 Pfam Regulator of chromosome condensation (RCC1) repeat 178 224 IPR000408 -
Aip07g01162 773 Pfam Regulator of chromosome condensation (RCC1) repeat 281 328 IPR000408 -
Aip07g01162 773 Pfam Regulator of chromosome condensation (RCC1) repeat 93 141 IPR000408 -
Aip07g01162 773 Coils Coil 506 526 - -
Aip07g01162 773 ProSiteProfiles BRX domain profile. 687 742 IPR013591 -
Aip07g01162 773 MobiDBLite consensus disorder prediction 627 656 - -
Aip07g01162 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 405 IPR013083 -
Aip07g01162 773 CDD FYVE_like_SF 341 394 - -
Aip07g01162 773 Gene3D - 171 344 IPR009091 -
Aip07g01162 773 PRINTS Chromosome condensation regulator RCC1 signature 230 244 IPR000408 -
Aip07g01162 773 PRINTS Chromosome condensation regulator RCC1 signature 214 230 IPR000408 -
Aip07g01162 773 PRINTS Chromosome condensation regulator RCC1 signature 74 87 IPR000408 -
Aip07g01162 773 MobiDBLite consensus disorder prediction 608 622 - -
Aip07g01162 773 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 280 331 IPR000408 -
Aip07g01162 773 MobiDBLite consensus disorder prediction 483 527 - -
Aip07g01162 773 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 176 227 IPR000408 -
Aip07g01162 773 Pfam FYVE zinc finger 339 398 IPR000306 GO:0046872
Aip07g01162 773 MobiDBLite consensus disorder prediction 657 678 - -
Aip07g01162 773 SUPERFAMILY RCC1/BLIP-II 34 332 IPR009091 -
Aip07g01162 773 Gene3D - 12 170 IPR009091 -
Aip07g01162 773 MobiDBLite consensus disorder prediction 483 499 - -
Aip07g01162 773 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 228 279 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01162 Aip-Chr7 16774248 16777954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01162 648 744 Major Intrinsic Protein MIP AT1G31880 30.928 1.68e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01162 - - ahf:112742992 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01162 07 16774248 16777954 Aip07g01162 07 16774248 16777954 ECH