Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01137 ATGATATTGAATTCGTTAAATGGGGTAGGTTGGAGTGGTCACTTTGTGTCAAAGAGAAGGTATCATTTCATAATTCCAATGGACAATTGGTGGAATAAACCCTTACCTGAGGATGCTATTGATAATCAGGACCACCTCTTGCATGGTGTGATTCACTGCAATGGCTATGGCCATTTGGTCTGCATTAATGGCATTGAAGGTGGCTCCAAGGTCCTCAGTGGTAGAGAGATCATGGATCTATGGGATAGGATCTGCACAAACCTTGGAGCAAGGAAAATTTCAGTGGAAGATGTTTCAAGGAAGCGATCCATGGATCTTCGCCTACTTCATGGTGTTGCATATGGCCATTCATGGTTTGGTAGGTGGGGCTACAAGTTTTGTCGCGGAAGCTTTGGAGTGACAGGCCAAACCTACTATGAAGCAATTGAAGGTCTAGGTTCCTTAGAGCTTGATGAAATAGTGAGAGATTTAAGCAAGACAAAGTGCCATAAAGAGATCAAGCAAATCATTCGCAGCTATAGAGACATGAGTGAAACTCAGATTACCACATTGAGAGATCTTCTAAGGTTCATGCTCACTGTCAAGTCTCGCGTCCCAATGTCCAAGATATCAATAACCCTCGGAGCTCCTCCTTCTTCGGCTTTCATCTCAAGAAATTCAACCAAACAAGGCTTCTTAAGTAGATCAAATCTGGCAAAGGAGAAGTCCGCAAAGTACAAGAAGTTCAGCACTGCAGTGGCTAATATGGATAGCAGGTGGCCAACAAGGAGGCTAGAGTTTGCTGCACAGGTGATTGTTGATGCACTGAAGGAGCACAAGGCAATGAACTCGGCTTCAGAGGGGATGACGCGGCAGGATGTGAGGGATGCATCTAGGCTTCATATTGGTGATACCGGCTTGCTCGATTATGTGCTGAAATCACTCAACAATGTGATTGTTGGCAACTATGTTGTTCGCCGCATGGTTAACCCCTCAACAAGGATCCTAGAATACACCATTCATGAGGTTGGCAATGGGTTTAAGTCCCCGGAAACTGTGGTTGAGCCTGAGGCAGCGGCTCTTGTAGACCCTCAAGACGAGTCATTTAGGATGCCTGGTAGTGATGTTTATTGTGATGTGTTCTACCTATACAAAAATGTGCTATTGAGATATCCGAATTCAGAACCAGTGGACTTAGCAATTCAGACAATCCTTGATAGCCGGTATTTTGTGAAGGAATGGGATTACATGGATGAGATGCAGCAGGCTTTGACATTCATCTGCCGGCTTAAGCCGAATTTCGTTGATATTAAAGCTGATTTGAGTAGGGAGCAGCCTTGTGGGGAGATTGTGATGGTTCCCCTGCATGCAACGGTTAGAGACCTGAAGCAAGCTGCAGAGGCAGCACTGAGGGATACCTACTGCATTGCAGAGAGGCTCATAGTCACTGAGATCACTGAATTGAATGGTGCAAGTGATAATGAGGTGCTATTTGGATTAATCCAATCCGGAGTGGAGCTTTCTGTGAGGGGGATTTCCATTGACTTGTGCACTCCATTGAAGTTCCAAGGTGAATCCGACAATTGGAAGGTGAGGTGTGAGTGTGGGGCACAAGACGATGATGGTGAGAGAATGGTGGCCTGCGACATATGTGAGGTCTGGCAGCACACAAGGTGTTGTGGCATTGAGGATTCTGAGACAGTGCCACCTTTGTTTGTGTGCTCCGGCTGCTGCGATTCGCTTGCCCCTCGGCAGATGGAGTCACCCTTTGCCATGGATTGTGTTGATGATTTTCTTGTTTCACCAGAGCCTACCTTGTTTCTGGAATATGAATGTGGTTACTGA 1824 0.46 MILNSLNGVGWSGHFVSKRRYHFIIPMDNWWNKPLPEDAIDNQDHLLHGVIHCNGYGHLVCINGIEGGSKVLSGREIMDLWDRICTNLGARKISVEDVSRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTGQTYYEAIEGLGSLELDEIVRDLSKTKCHKEIKQIIRSYRDMSETQITTLRDLLRFMLTVKSRVPMSKISITLGAPPSSAFISRNSTKQGFLSRSNLAKEKSAKYKKFSTAVANMDSRWPTRRLEFAAQVIVDALKEHKAMNSASEGMTRQDVRDASRLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHEVGNGFKSPETVVEPEAAALVDPQDESFRMPGSDVYCDVFYLYKNVLLRYPNSEPVDLAIQTILDSRYFVKEWDYMDEMQQALTFICRLKPNFVDIKADLSREQPCGEIVMVPLHATVRDLKQAAEAALRDTYCIAERLIVTEITELNGASDNEVLFGLIQSGVELSVRGISIDLCTPLKFQGESDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIEDSETVPPLFVCSGCCDSLAPRQMESPFAMDCVDDFLVSPEPTLFLEYECGY 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01137 607 SUPERFAMILY FYVE/PHD zinc finger 517 576 IPR011011 -
Aip07g01137 607 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 579 - -
Aip07g01137 607 ProSitePatterns Zinc finger PHD-type signature. 526 570 IPR019786 -
Aip07g01137 607 CDD PHD_MMD1_like 526 570 - -
Aip07g01137 607 SMART PHD_3 525 571 IPR001965 -
Aip07g01137 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 575 IPR013083 -
Aip07g01137 607 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01137 Aip-Chr7 16177927 16180489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01137 4 576 PHD Transcription Factor Family AT5G22260 33.066 4.36e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip07g01137 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01137 - - mtr:MTR_5g077750 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01137 07 16177927 16180489 Aip07g01137 07 16177927 16180489 ECH