LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g01120	ATGTCGCTTCTTTCCTTCTTCACATTCTTCATCTTTTTGTTCTTCACACCCACTCTTGCTTCCACCGAGTTTGACTTTGGAACCTTAACGCTCAGTTCTCTCAAGCTCCTCGGCGACGCTCACTTGAACAACGGAACCGTCAGCCTCACGCGCGACCTTCCCGTCCCCAACTCCGGCTCCGGCAGAGCCTTATATTCTCGTCCGGTCAGATTCCGCCAACCGGGAAACCATTCTCCGGCCAGCTTCCGAACCTTCTTCTCATTTTCTGTAACCAATCTCAACCCTTCATCAATTGGCGGCGGCCTCGCATTTGTCCTCACGCCGGACGACGACTCCCTCGGCGACGCCGGCGGAAGTCTCGGCCTTGCCGCCGCCGCCACGAAGTTCGTCGCCGTTGAATTCGACACGTTAATGGACGCTGAGTTCAAGGACATTAACGGTAACCACGTCGGCGTGGACTTAAATAGCATGGTTTCGGCGAAGGTTTTCGACTTGGGATTCATCAATGTCGATCTCAAAAGCGGTGACACGGTGAACGCGTGGATCGAGTTCGATGGATCAACAACGGTTTTAACGGTGTGGGTCTCGTACTCGAATCTGAAACCGAAAGACCCCATTTTGACAATGAATCTTGACGCCGATAGATACTTCAACGATTTTATGTATGTAGGGTTTTCTGGTTCTACACAAGGAAGCACCGAGATTCACAGTGTTGAATGGTGGAGCTTTAGCTCTTTCTTTCCGTCGTCTTCGGCGGGGGCGGCGGCGCCGCCACCGCCGGCGGTTACTCTGATGAACCCGGGGGCTAATTCAGCTGGTTCTTCGTCGTCGTTGTCGCCACCGCCATCAATTGCGCCTTCAGTGGCACAAAAGGAGAGTAAGTCGTCTTCTTGCCACAATGGTTTGTGTAAAGAAAATTTGGGTGCGGTTGCCGGTGTTGTTACTGCTGGTGCTTTTGTTCTTGCTTTATTTGCTGGTGCTTTGATTTGGGTTTATTCTAAGAAATTCAAGCGTGTTAAGAAATTGGATACACTTGGTTCTGAGATTATTAAGATGCCTAAGCAGTTTAGTTATAAGGAGTTGAAGGCTGCTACTAAGTGTTTCAATGCTAATAGGATCATTGGTCATGGTGCTTTTGGTACTGTGTATAAAGGTGTTATGCCTGAGAATGGAGAAATTGTTGCGGTGAAGAGGTGTAGCCACAGTAGTCAAGGTAAGAATGAGTTCTTGTCTGAGTTGTCCATAATTGGAACCCTTCGGCACCGGAATCTTGTTAGGCTTCAGGGTTGGTGTCACGAGAAAGGCGAGATTTTGTTGGTGTATGACTTGATGCCTAATGGGAGTTTGGATAAGGCTTTGTTCGAGGCCCGGATGCCTCTGCCTTGGTCTCACCGGAGAAAGATTTTGTTGGGGGTGGCATCCGCATTGGCATACTTGCATCAAGAGTGTGAGAATCAGGTTATTCATAGGGATATTAAGACTAGTAACATAATGTTGGATGAAGGGTTTAATGCCAGGTTGGGGGATTTTGGTTTGGCAAGGCAAACTGAGCATGATAAGTCTCCGGATGCCACAGTGGCAGCCGGAACAATGGGGTACCTGGCGCCCGAGTATCTCCTTACTGGCAAAGCTACTGAGAAGACTGATGTGTTTAGTTACGGGGCGGTGGTCCTTGAGGTTGCTAGTGGGAGAAGACCAATAGAGAAAGATGCTACTGGGGCTGGAAAAGGCGGTGTTAGTAGCAATTTGGTAGAATGGGTTTGGACTTTGCATAGGGAAGGGAGGTTGCTAATGGCGGCTGATCCGAGACTCGAGAACGAATTCGACGAAGCAGAGATGAGGAGGGTGCTGATGGTTGGGCTAGCTTGCTCAAACTCGGACCCGTTGGCTCGGCCTTCGATGAGGAGTGTGGTTCAGATGCTGGTTGGTGATGCTGAAGTTCCTATTGTCCCAACAACAAAACCAAATACAGGTTTAAGTACCTCGCACTCTCAACTCTTATTGAGCTTGCAAGATAGTGTATCTGACATTGACGGAATAATCACCATTTCTACCTCAACTTCAGAGAACAGCTTCAGTGGTATAGATATAGTCTGA	2097	0.4893	MSLLSFFTFFIFLFFTPTLASTEFDFGTLTLSSLKLLGDAHLNNGTVSLTRDLPVPNSGSGRALYSRPVRFRQPGNHSPASFRTFFSFSVTNLNPSSIGGGLAFVLTPDDDSLGDAGGSLGLAAAATKFVAVEFDTLMDAEFKDINGNHVGVDLNSMVSAKVFDLGFINVDLKSGDTVNAWIEFDGSTTVLTVWVSYSNLKPKDPILTMNLDADRYFNDFMYVGFSGSTQGSTEIHSVEWWSFSSFFPSSSAGAAAPPPPAVTLMNPGANSAGSSSSLSPPPSIAPSVAQKESKSSSCHNGLCKENLGAVAGVVTAGAFVLALFAGALIWVYSKKFKRVKKLDTLGSEIIKMPKQFSYKELKAATKCFNANRIIGHGAFGTVYKGVMPENGEIVAVKRCSHSSQGKNEFLSELSIIGTLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARMPLPWSHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGKATEKTDVFSYGAVVLEVASGRRPIEKDATGAGKGGVSSNLVEWVWTLHREGRLLMAADPRLENEFDEAEMRRVLMVGLACSNSDPLARPSMRSVVQMLVGDAEVPIVPTTKPNTGLSTSHSQLLLSLQDSVSDIDGIITISTSTSENSFSGIDIV	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g01120	698	Pfam	Protein kinase domain	369	639	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip07g01120	698	ProSitePatterns	Legume lectins beta-chain signature.	130	136	IPR019825	-
	Aip07g01120	698	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	487	499	IPR008271	GO:0004672\|GO:0006468
	Aip07g01120	698	ProSiteProfiles	Protein kinase domain profile.	368	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip07g01120	698	MobiDBLite	consensus disorder prediction	267	290	-	-
	Aip07g01120	698	Gene3D	Transferase(Phosphotransferase) domain 1	444	647	-	-
	Aip07g01120	698	PANTHER	L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2	17	691	-	-
	Aip07g01120	698	SUPERFAMILY	Protein kinase-like (PK-like)	350	664	IPR011009	-
	Aip07g01120	698	CDD	STKc_IRAK	374	641	-	-
	Aip07g01120	698	Gene3D	-	20	255	-	-
	Aip07g01120	698	PANTHER	-	17	691	-	-
	Aip07g01120	698	Pfam	Legume lectin domain	22	246	IPR001220	GO:0030246
	Aip07g01120	698	ProSitePatterns	Protein kinases ATP-binding region signature.	374	397	IPR017441	GO:0005524
	Aip07g01120	698	Gene3D	Phosphorylase Kinase; domain 1	331	443	-	-
	Aip07g01120	698	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	257	IPR013320	-
	Aip07g01120	698	SMART	serkin_6	368	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip07g01120	698	CDD	lectin_legume_LecRK_Arcelin_ConA	38	241	IPR001220	GO:0030246
	Aip07g01120	698	MobiDBLite	consensus disorder prediction	258	290	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g01120	Aip-Chr7	15819523	15822298	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g01120	1	680	Receptor kinase-like Gene Family	AT3G53380	69.828	0.0	936

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Aip07g01120		Pkinase	3e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g01120	-		-	gmx:100810624	1043.11