Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01049 ATGATAACCGACGATAATATATTCGCGGGTTCTTCATCCTATGAACCCTTTTCAATGTCCGGTGGTAATTGCATGGACGAATTGCTAGCAGCTATAGGCTACAAGAAGGTGCGATCAAAGGACAACATGGCTGACGTGGGCCAGAAGCTGGACCAGCAGCTCGAAAAGGTGATGATGGATAATAATGTCAATGCACGCGAAGACGGTACCTCTTCCAACGTCGCTTCAGACGACGCCGTCGTTCACTATGATGACCCCAACGATGTCTTCCCCTGGGAAAAAACCATGCTCACCCCCACGACCACCCACAACAATAACCAAAACGACACCACAATCACCAATTCACTGCCGTTTACGCAAATCCTGGAGGACCCTTTACAGTTCAACATTCTCAACGGAAACTCAGCCAACTACAACGACCTTAGAGCGGTTACCGAAACCGTAAAATCGCAAGTGGAGCCACACTCAGACCTCACGTGCCATTGTGTGGCGGTCGAGGACACTGGCGTGCGTCTCGTTCACGCGCTCATGGCCTGCGCGCAGGCGATCCAGGAAGAGAAGCTTGACCTCGCTGACGTGCTCGTGAACCACGCGTCGGTCCTCGCGTCGCAGCAGGGCGGTGCGATGAGGAAAGTCGCCGCCAACTTTTCTCACGCGTTGGCGCGTCGAATCTACGGCGCGTTCCCGGAGGAGTCCATGAGCCCCTCGCTCTCCGACATGCTCCACGTCCACTTCTACGAGACTTGCCCGTACCTCAAATTCGCGCACTTCACCGCCAACCAAGCGATTCTAGAAGCTTTCTCCTCCGCAACCACCGTCCACGTCATCGATTTCGGCCTGAAGCAGGGGCTTCAGTGGCCCGCCCTCATGCAGGCCCTGGCACTCCGTCCCGGCGGACCACCATCATTCCGGTTAACCGGAATCGGACCGACATCGCCGGAGGACACCGACACTCTTCAACAAGTCGGTTGGAGGCTTTCGCAGCTTGCGAGAACGATTCAGGTTCGGTTCGAGTTCCGGGGATTCGGCTGTAACAGCCTCTCGGATCTTGATCCAACGGCTCTTGATATCAAACCAGGAGAAGCCGTCGCCGTTAACGCCGTCTTTGAGCTTCACCGTATGCTCGCCAAGCCCGGTTCTCTCGAGAGGGTTTTGAACACAGTAAAAAATATCGAACCGGAGATAGTAACGGTGGTGGAGCAGGAAGCGAACCATAACGGTCCTGTGTTTTTTGAACGGTTCACGGAGGCGATGCATTATTACTCGAGTTTGTTTGATTCGATGGAAGGATCGGTAAATGAGGATGGGACTCTTTCGGAGGTTTACTTAGGGAGGCAGATATGCAACGTTGTGGCGTGCGAAGGGGAGGACCGACCNNNNNNNNNNNNNNNNNNNNNNNNNGTGGAGGAGAACGACGGGTGTCTGTTGCTCGGTTGGCAAATGAGGCCACTCATTGCTACATCCGCGTGGAGAGTCGCCGGCGGCGCCCGCCGCCATTGA 1500 0.542 MITDDNIFAGSSSYEPFSMSGGNCMDELLAAIGYKKVRSKDNMADVGQKLDQQLEKVMMDNNVNAREDGTSSNVASDDAVVHYDDPNDVFPWEKTMLTPTTTHNNNQNDTTITNSLPFTQILEDPLQFNILNGNSANYNDLRAVTETVKSQVEPHSDLTCHCVAVEDTGVRLVHALMACAQAIQEEKLDLADVLVNHASVLASQQGGAMRKVAANFSHALARRIYGAFPEESMSPSLSDMLHVHFYETCPYLKFAHFTANQAILEAFSSATTVHVIDFGLKQGLQWPALMQALALRPGGPPSFRLTGIGPTSPEDTDTLQQVGWRLSQLARTIQVRFEFRGFGCNSLSDLDPTALDIKPGEAVAVNAVFELHRMLAKPGSLERVLNTVKNIEPEIVTVVEQEANHNGPVFFERFTEAMHYYSSLFDSMEGSVNEDGTLSEVYLGRQICNVVACEGEDRXXXXXXXXXVEENDGCLLLGWQMRPLIATSAWRVAGGARRH 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01049 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 459 IPR005202 -
Aip07g01049 499 Pfam Transcriptional regulator DELLA protein N terminal 26 98 IPR021914 -
Aip07g01049 499 Pfam GRAS domain family 172 459 IPR005202 -
Aip07g01049 499 PANTHER DELLA PROTEIN RGL1 25 459 IPR030006 GO:0003712|GO:0005634
Aip07g01049 499 SMART DELLA_2 26 110 - -
Aip07g01049 499 Gene3D - 24 99 IPR038088 -
Aip07g01049 499 ProSiteProfiles GRAS family profile. 163 499 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01049 Aip-Chr7 13767346 13768845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01049 25 492 GRAS Transcription Factor Family AT1G66350 49.609 8.72e-161 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip07g01049 GRAS 2.6e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01049 K14494 - gmx:100799695 511.531