Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00987 ATGAGTTTTGTATTCCGGGGAACAAGAGCGGACATAGAAAATGGATTTCCAGGATTTATGCCTGAGCGACGTGCATTGCGTGTTCATCCAGCACGTCCTAGTAATTCCAATTCACTCACTTTCCTCGTCACAGTTCTCTTGTTGTTCATGATACTTAACTCGCACCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTAATGGCTACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCTCAAGCTCATGCAGCAGCAGCTAGTGGGCTTTTAGGCCACACTGAGCTGCGGTTGCATATGCCGCCATCAATTGCCCTTGCCACCAGAGGACGCCTACAAGGCCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGAGCTAGATTATGAAACACTAAGGGCTCTTGATTCTGATAATGTTCCTACTGCACCTTCCATGACCGAGGAAGAGATAAATGCACTTCCTGTACACAAATACAAGGTTTCTGGTCCACAAAATGGCACTGGTTCCTCAATGCAACAGGGGTCATCTTCCACTCCTGCGGAGAAGAAGCAAGACAATTCAAATGTAGCTGGAAGCATGAAAGCCGCTGATGATGAGCTGACTTGCAGTGTATGTTTGGAGCAAGTTAACATTGGGGATGTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCGAATTGCATTGATCCCTGGCTGCGACAACAAGGAACATGCCCCGTCTGCAAATTCAGAGCGGGATCTGGGTGGAATGAAAGTGGAGCTAATGATATTGCAGATATGGTTTGA 825 0.4667 MSFVFRGTRADIENGFPGFMPERRALRVHPARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDELDYETLRALDSDNVPTAPSMTEEEINALPVHKYKVSGPQNGTGSSMQQGSSSTPAEKKQDNSNVAGSMKAADDELTCSVCLEQVNIGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNESGANDIADMV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00987 274 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Aip07g00987 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 268 - -
Aip07g00987 274 SUPERFAMILY RING/U-box 208 258 - -
Aip07g00987 274 SMART ring_2 214 254 IPR001841 -
Aip07g00987 274 Pfam Ring finger domain 213 255 IPR001841 -
Aip07g00987 274 PANTHER TARGET OF ERK KINASE MPK-1 1 268 - -
Aip07g00987 274 CDD RING-H2_PA-TM-RING 213 255 - -
Aip07g00987 274 MobiDBLite consensus disorder prediction 174 203 - -
Aip07g00987 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 259 IPR013083 -
Aip07g00987 274 MobiDBLite consensus disorder prediction 170 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00987 Aip-Chr7 12521901 12524951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00987 1 274 C3H Transcription Factor Family AT3G55530 77.256 2.45e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00987 K16283 - gmx:100777936 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00987 07 12521901 12524951 Aip07g00987 07 12521901 12524951 ECH