Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00985 ATGTCTTCGCATTGGTGTTACAGGTGCAATAAATTTGTGAGGGTATGGAGGCAGGACATTGTGATATGTCCAGATTGCGATAGCGGTTTCGTCGAAGAGGTAGATCCTAACACACGCACCGTTTACGCCGATGGCAACCGCAGCCGACGGTTGCCGGCGGCAGCGATGTACATGATAGGCCACCATCAACGTCACCAGCGTCATAATTCCATTGAAAATAACGCCGTCGCCACCACTACAAACGATAATAGCAATAATAATAACAACAACAATGTCGGCTTGTCGCGGCAAAATCAACGGCGACACTGCCGGAACACCAATGGCGGTGGCGGAGGAACAGGCGGTGACAGGTCGCCGATCAATCCGGTCATTATGCTCCGGGGCGGCGAGCAATCCGAGGGAACCAGCAGACGCAGGGGGTTCGAGCTTTTCTATGACGACGGCGCCGGTGCCGGTCTCCGCCCCTTGCCGCCGAGCATGTCGGAATTTCTCCTCGGAACAGGCTTCGATAGGGTTTTGGAGCAGTTCTCACATTTCGAAAGGCACGAGCGACACCTTCACCACCACAACCAGCAGCCTCCTCCGGCGTCAAAATCCGCCGTAGAAGGCTTGCCGGAGGTGGAGATCACCGAGAACAACCTCGCGGCAGAGCCACATTGCGCAGTTTGCAAGGAAGCCTTCGAGATCGGAACAAAAGCTAAAGAAATGCCGTGCAAGCACATATACCACTCGGACTGCATCTTGCCGTGGCTCGCCCTTCGAAACTCCTGCCCGGTTTGCCGCCACGAGTTACCCACAGAACAAAACAATAACGGTCACGTGCAGAACGCGGCCACCAACGACAGCGCACGTGCCGATCAAGAAGACAACAATAACAACAACAATAACAATGATAACGGCAATAATAACAATGTGGGGCTAACAATATGGCGGTTACCGGGTGGCGGTTTTGCGGTTGGGAGGTTAACCGGTGCAGGAAGAGGAGGATCAGAGAGGGAGAATCTTCTTCCTGCTGTGTACACAGAAATGGATGGAGGAGGGTTTGATAGTAATAACAACAATAATAATAATGGTGGCGGTGGTGGTGGTGAGAGGAGGAGGGTTTCTTGGGCGGTTTCAACTACTTCAAGAGAGAGAGAAAGTGGTGGTGGGTTGAGGAGAATGATGAATAGTTTCTTTGGTTGCTTCAGACGTGGTAATCATGGTGCTCTTCATCATCATCATTCTTTTCCTTCTTCTTCTCGGAATGGTGATTATCCTAGGCAGTATTCATCATCATCACCTTCAAATAGAAATAGAACTATGACAAATAATGGCACGGCACCTTCCGCTGTCAATTTCGATTTGGATCACTCTCCATTGCGTCAACGCAGGACTTGGTCTATGGATGTAAACAGTGGTGGTTCTAGAGCATGGTGA 1419 0.5095 MSSHWCYRCNKFVRVWRQDIVICPDCDSGFVEEVDPNTRTVYADGNRSRRLPAAAMYMIGHHQRHQRHNSIENNAVATTTNDNSNNNNNNNVGLSRQNQRRHCRNTNGGGGGTGGDRSPINPVIMLRGGEQSEGTSRRRGFELFYDDGAGAGLRPLPPSMSEFLLGTGFDRVLEQFSHFERHERHLHHHNQQPPPASKSAVEGLPEVEITENNLAAEPHCAVCKEAFEIGTKAKEMPCKHIYHSDCILPWLALRNSCPVCRHELPTEQNNNGHVQNAATNDSARADQEDNNNNNNNNDNGNNNNVGLTIWRLPGGGFAVGRLTGAGRGGSERENLLPAVYTEMDGGGFDSNNNNNNNGGGGGGERRRVSWAVSTTSRERESGGGLRRMMNSFFGCFRRGNHGALHHHHSFPSSSRNGDYPRQYSSSSPSNRNRTMTNNGTAPSAVNFDLDHSPLRQRRTWSMDVNSGGSRAW 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00985 472 Pfam Protein of unknown function (DUF1117) 305 414 IPR010543 -
Aip07g00985 472 MobiDBLite consensus disorder prediction 77 106 - -
Aip07g00985 472 MobiDBLite consensus disorder prediction 346 360 - -
Aip07g00985 472 MobiDBLite consensus disorder prediction 341 384 - -
Aip07g00985 472 SMART ring_2 220 260 IPR001841 -
Aip07g00985 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 268 IPR013083 -
Aip07g00985 472 MobiDBLite consensus disorder prediction 282 306 - -
Aip07g00985 472 Pfam Ring finger domain 219 261 IPR001841 -
Aip07g00985 472 MobiDBLite consensus disorder prediction 77 119 - -
Aip07g00985 472 MobiDBLite consensus disorder prediction 183 202 - -
Aip07g00985 472 CDD RING-H2_RNF126_like 220 261 - -
Aip07g00985 472 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 391 - -
Aip07g00985 472 SUPERFAMILY RING/U-box 202 268 - -
Aip07g00985 472 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 391 - -
Aip07g00985 472 MobiDBLite consensus disorder prediction 405 452 - -
Aip07g00985 472 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Aip07g00985 472 MobiDBLite consensus disorder prediction 407 445 - -
Aip07g00985 472 Pfam zinc-ribbon 3 33 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00985 Aip-Chr7 12482884 12485747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00985 194 267 C3H Transcription Factor Family AT5G15820 57.333 1.47e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00985 - K11982 zju:107413417 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00985 07 12482884 12485747 Aip07g00985 07 12482884 12485747 ECH