Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00926 ATGTCAATGTTGGTTACTGAGGACAACAACAACAACAATAATAAGCCTCATGTTGTTGTTGACGTAGACAATAATGTCTCTCAAGGTAGTACTAGTAGCTGTGTCGGCAATGAAGGTTGTGCTTCTTCTGAGACAAGTGAGGAACAACAACAAAGTAATTCCCATGATTCTGGTTCCGAGATTGTTGCTGGAGCAATTGAGAAAGAGAGAGGGTCTTCAGTTTCATCAGATCAGTGTTCTGTGGAGCTTGTGGATCTGGAGAGTGATGTGGATAAGGTACGGCACTTAGATCATGATAACAATAATAATAATAATAAGGTGGAGAGGGATTGCAGGATTTGTCACCTAAGCATGGATATGACCAACCATGAATCTGGTGGGTCCCCCATTGAACTTGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCACATAAACAATGTGCTGAGGCTTGGTTCAAGATCAAAGGCAACAAAACTTGTGAAATTTGTGGATCAATTGCACACAATGTAGCCGGCACAATCGAAGTTCAAATGACAGAACAGTGGAATGACTCCAATGATGCTTCCATTGCTCCACCAACCGGGCCTGCACCCCCGGCCAGCGAAACTCGAAACTTCTGGCAGGGACATCGTTTTTTGAATTTCCTACTAGCTTGTATGGTCTTTGCATTTGTCATATCCTGGCTTTTTCACTTCAATGTGCCCTCATGA 711 0.4318 MSMLVTEDNNNNNNKPHVVVDVDNNVSQGSTSSCVGNEGCASSETSEEQQQSNSHDSGSEIVAGAIEKERGSSVSSDQCSVELVDLESDVDKVRHLDHDNNNNNNKVERDCRICHLSMDMTNHESGGSPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGTIEVQMTEQWNDSNDASIAPPTGPAPPASETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00926 236 Pfam RING-variant domain 111 163 IPR011016 GO:0008270
Aip07g00926 236 PANTHER ZINC FINGER, RING-CH-TYPE 20 236 - -
Aip07g00926 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 172 IPR013083 -
Aip07g00926 236 CDD RING_CH-C4HC3_MARCH 111 164 - -
Aip07g00926 236 SUPERFAMILY RING/U-box 106 166 - -
Aip07g00926 236 ProSiteProfiles Zinc finger RING-CH-type profile. 103 170 IPR011016 GO:0008270
Aip07g00926 236 SMART ringv_2 110 164 IPR011016 GO:0008270
Aip07g00926 236 MobiDBLite consensus disorder prediction 24 58 - -
Aip07g00926 236 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00926 Aip-Chr7 11205539 11209026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00926 15 236 C3H Transcription Factor Family AT5G05830 52.915 5.75e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00926 - - adu:107457785 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g01862 04 83410651 83411218 Aip07g00926 07 11205539 11209026 ECH
Aip02g02116 02 90778651 90783054 Aip07g00926 07 11205539 11209026 ECH
Aip07g00926 07 11205539 11209026 Aip07g00926 07 11205539 11209026 ECH