Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00912 ATGGAATTGGAAAGCGTGTATCCTGGGTGGAATTGGAACTGGAATTTGTTAGAGCAAGAGAGGCAGAGCAGCAGCAGAGAATGGAGTAAAGAGGACAACAAGAAGTTCGAGAGCGCGCTGGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAGAGAGCTGGAAGAAGATGTCAATGATATAGAAGCCGGCCGGGTCCCTGTCCCCGGCTATATCGCCTCTTCTTTCACCTTCGAGCTTCTTCACCACCACAACCATGATGGATCTCGAAGAAGGCCTAATACCCCTAGACCTTCTTCTGATCAAGAAAGGAAGAAAGGTGTTCCTTGGACTCAAGAGGAGCACAGACGTTTTCTGATGGGGCTTTTGAAGTATGGAAAAGGAGATTGGAGAAACATTTCACGCAATTTCGTGGTGACGAAGACTCCTACTCAAGTTGCTAGCCATGCTCAGAAGTACTACATAAGGCAAAAGGTTTCTTCAGGAGGGAAAGATAAGAGGAGACCGAGCATCCATGATATAACAACTCTTAACCTCGCAGAAGCCACTGCTACTTTAGATGATAATAATATCAACAAGCCCCTCTCATTCAATGAGTCTAAAGTACAATTGGACTGGTTCAATCACTGTAATGATGATGGATCAGTGATGGTTTTCGACCCCAATTGCGACCATTTGCAAGAGCAGGATCTCTTTGATTGTGCTTTCCATGAAGCTTATGCAAAGCTCAAGATCCCGCATTTCAACAAGGAAGCTGATTTCGGTATTCATGCATTGTAA 864 0.3935 MELESVYPGWNWNWNLLEQERQSSSREWSKEDNKKFESALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRELEEDVNDIEAGRVPVPGYIASSFTFELLHHHNHDGSRRRPNTPRPSSDQERKKGVPWTQEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTLNLAEATATLDDNNINKPLSFNESKVQLDWFNHCNDDGSVMVFDPNCDHLQEQDLFDCAFHEAYAKLKIPHFNKEADFGIHAL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00912 287 SMART sant 134 184 IPR001005 -
Aip07g00912 287 Coils Coil 33 41 - -
Aip07g00912 287 MobiDBLite consensus disorder prediction 111 139 - -
Aip07g00912 287 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Aip07g00912 287 Gene3D - 136 187 - -
Aip07g00912 287 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 78 266 IPR043363 -
Aip07g00912 287 SUPERFAMILY Homeodomain-like 131 186 IPR009057 -
Aip07g00912 287 CDD SANT 137 181 IPR001005 -
Aip07g00912 287 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Aip07g00912 287 Coils Coil 79 92 - -
Aip07g00912 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Aip07g00912 287 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 78 266 - -
Aip07g00912 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Aip07g00912 287 Pfam Myb-like DNA-binding domain 137 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00912 Aip-Chr7 10944168 10946212 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip07g00912 Myb_DNA-binding 2.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00912 - - gmx:778039 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g02208 02 93097627 93100764 Aip07g00912 07 10944168 10946212 ECH
Aip07g01531 07 27833195 27834764 Aip07g00912 07 10944168 10946212 ECH
Aip01g00430 01 5514319 5516973 Aip07g00912 07 10944168 10946212 ECH
Aip07g00912 07 10944168 10946212 Aip07g00912 07 10944168 10946212 ECH