Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip07g00902 | ATGGAGTTCACCTCTTTTTCATGGGAAATCAATTCTAAAGAAGATCCAAGCATACCACAAGACTCCTATTTCGATGATTGTTTTTCCATCATCTTTAGATTCACCAAAGAATTGATCCAAATAACTCAAAGCACAAATTTTCCTTCTACTACAAGTACGGCCAATGAATCGTTCTTGGTTCCTTCTGATATCCTATGTAACTTCAGAGAAAACACTGCATTCTTACATGAAACCTTCTCTTCAGTGCCTATATCCCCTGAGATATTGGACCAAATTTTACCTGTCATGGGCGAAACTGCAAGAACGATTCTAAGCCATGAAGGGTGTGACTCCACCAATATGCGGGGTATTTTTGTGAACCTCCATGTTACCACGCGCATTGTTATTGAAGATTCTGATTTCTATAATGATGATATCGGTCAAAATGTTCCTGAACCAGCTCAATTCGTGAATCTGTTGGAGAGATCGAAAATTGATGAGCAAGATGATGATGTTGAAGAACAATGTGCTATTTGCTTGGAAGAGTTTGGACATGGTATTGAAGATTCACGTGTAGCAATTGTTCGCACAAATTGCTCGCATGTGTTCCATGAATGTTGTATATTCCGTTGGTTTCGGCGTTGTGCCGACCGTCACTCGCCCTATTCTTGCCCATTGTGCCGCTGCAACATATTTCCAACCTCACCGAGAGATGAATAG | 699 | 0.4063 | MEFTSFSWEINSKEDPSIPQDSYFDDCFSIIFRFTKELIQITQSTNFPSTTSTANESFLVPSDILCNFRENTAFLHETFSSVPISPEILDQILPVMGETARTILSHEGCDSTNMRGIFVNLHVTTRIVIEDSDFYNDDIGQNVPEPAQFVNLLERSKIDEQDDDVEEQCAICLEEFGHGIEDSRVAIVRTNCSHVFHECCIFRWFRRCADRHSPYSCPLCRCNIFPTSPRDE | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip07g00902 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 226 | IPR013083 | - | |
| Aip07g00902 | 232 | CDD | RING-H2 | 169 | 221 | - | - | |
| Aip07g00902 | 232 | SUPERFAMILY | RING/U-box | 159 | 227 | - | - | |
| Aip07g00902 | 232 | SMART | ring_2 | 169 | 220 | IPR001841 | - | |
| Aip07g00902 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 169 | 221 | IPR001841 | - | |
| Aip07g00902 | 232 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 82 | 226 | - | - | |
| Aip07g00902 | 232 | Pfam | Ring finger domain | 168 | 221 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip07g00902 | Aip-Chr7 | 10653269 | 10653967 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip07g00902 | 167 | 225 | C3H Transcription Factor Family | AT4G12190 | 38.983 | 6.48e-08 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip07g00902 | - | K11982 | adu:110273516 | 353.984 |