Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00901 atgttcgACCTCAACAGAGAAGACACAATCTTATTGCATGAAATCTTCTCTTCAGTGCCTGCATCCCCTGAGTTATTGGACCAAATTTTACCTGCCATAGGCGAAACTGCAAGAAGGATTCTAAGCCGTGAAGGGTGTGACTCCAACACGCTGGAGATTGTTGTGAACCTTCACGTTGTTACCAGGCGCAACATTGTTCAAGATTCTGATATCTATAATGATGATCTCTGTGAAAACGTTCCTGAACTAGCACAACTCGTGAATCTGTTAGAGAGATCCAAAATTGATGAGCAAGATGATGACGCTGAATGCGCTATTTGCTTGGAGAAGTTTGGCCATGGTAACGAAGATTCAAGTGTAGAAGTTGTTCGCATAAATTGCTCGCATGTTTTTCATGATCGTTGCATGCTCCGCTGGCTCCGATGCTGTGCCGACCATCAGTCGCCGTATTCTTGCCCATTGTGCCGCTGCCTCATATCTCCAACTTCACACGGTGACGATGAATAG 507 0.4458 MFDLNREDTILLHEIFSSVPASPELLDQILPAIGETARRILSREGCDSNTLEIVVNLHVVTRRNIVQDSDIYNDDLCENVPELAQLVNLLERSKIDEQDDDAECAICLEKFGHGNEDSSVEVVRINCSHVFHDRCMLRWLRCCADHQSPYSCPLCRCLISPTSHGDDE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00901 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 88 162 - -
Aip07g00901 168 SMART ring_2 104 155 IPR001841 -
Aip07g00901 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 163 IPR013083 -
Aip07g00901 168 SUPERFAMILY RING/U-box 96 161 - -
Aip07g00901 168 CDD RING-H2 104 156 - -
Aip07g00901 168 PANTHER RING ZINC FINGER PROTEIN-RELATED 88 162 - -
Aip07g00901 168 ProSiteProfiles Zinc finger RING-type profile. 104 156 IPR001841 -
Aip07g00901 168 Pfam Ring finger domain 103 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00901 Aip-Chr7 10617305 10619798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00901 89 156 C3H Transcription Factor Family AT4G12190 37.500 2.15e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00901 - - ahf:112762800 347.051