Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00867 atgcccgtagctCCCTCTCTCGCCCTAATCTCAAACCCTAGACCTCTTTCCAGAGCCGTCTATTTCCCTGTTCTCAACCCTCCCAAGGTGAGAGGGTTAAGCATAGAGTGCGCTCGAGTTGGCGGAGTGAAGATTACGAACAACAAGAGAATCGAGTTCTCGCTACAGTACATCCATGGAATCTCAGTGCTATGCGATGCCGAAGTCGCACTCATCGTCTTCTCTACCACAGGCAAGCTCTTCGAATATTCCAGCGATCCCTGGTTCAAAGAACAACAAGAATATGAAGGTTGGAAGTGTTCAAGTAGCTGCTTCTCAAAGAGTATTTTTATAGAATACGGATTGAATCAAAATGAAGAAGCAAGAACAGAGTTGAGAGCAGTAGATGCGTGGATACTGACTGACAAGCCTTACTCTAATCAATCCATTCATTCGGAATTATTGAATTTGGAGAAGATCAGAGAATACAGGGTAGTGATCCCTCCGAACCTCCCCTCAGTTCAGAATTTCGAGCACAAACCCAAACGGAGTTTTTACTTGaagcattatcatcatctccagaaatacatagCATCAACACTTCAACAGTTGATAGCAAAGAACTGGTGTGTGCGACTCTTGGATATACATAGCAACTTTGTTGAATTGAAGGAGTTTTTTCAAGAGAAACAGATGGAGAATTACAAGCATCAACAATTGATAAAGAAGATAATAGAGGAGCAAGAGCAAGAAACTAAGAACAAGAAGAACCAAGAACAACAAGGTGGTTACTCTGTGGAAGAAAGAACAACCGTTGGTGGTGGTCGTGCAACTGCGACGGCAAAGGCAGTGGACATTGCTCCTCGTCTGACATCTTTTCTTGAGAAAGATGAATCTTTTCTTACTCCTTGGAGTTGGGATTCCAATTCTTCTTCAAGTTCTTTAAACCAACAAGGAAGAAAAAGCCACCATCAATTTCAACCTGGGTCGTTTTTCGTTAGAGAGAGTAGTGCGCCACTCACCACCGCCAAGAAGCACGTCCACGGTCTATCAAAGATTCAACATTCAAGTTGCCTTCTCATCGCCTACTACCTCCTGGTCCATTGGTCGTCAGTCGTCAGTCGCCAGTCGCCACCTCCGGTCTCCCTCTTCTCTGCTCGTCCCTCCATCCCTCCAGAGTCCAGGGGTGGAGGAATTAACCGGGTTAAGCATCATTTGGCTGGAAAAGGCGGATATATTGAGGCATGTCGAAAGGTGCCAGCTGTGGTGAGACACCAATTCAATCAAAACATTGAAGATCTTCGAACCAAGAAAAGAAAAACTCAAGAAGAATATGCAGAAAGTTATGGTGCTTGTGATGATGTTGAAAGGGAATTTGATGAGATTGAACGTAATGAGATGCGACAACAACAAGCATCAAGAATTCCAGCACCTAGCTCTAGAAAGGGAGTTGGAAAACAACTCAAGGGATTACAATCCTTTTTTCCACTTGCAGCAacacctggaactcaaccaaATAGTGAAGATAGAGCTGCAATGGGTTTCCTTTATCAAGCTATGTATAAGGCTAGGGAAGACATGGTGAAGAGGTTTCAAAAAAGAAAGAGGGTTGTTGAACCTTATTTGAAGATTTTAGATTCACGTTGGGATTCACAACTTAAAAGAAACCTTCATGCTGCTGGTTATTGGTTAAATCCAGCTTTTCGATTTAATTCTGCAGAATTTGACAAGCACAAAGAAACAATTTCTGGCCTACTAGATGTGATTGAGAGATATGCTTACGGTGATGCTGATTTGAATACTAAATTGACAAGTGAGAAGAGAATCTTTAAGAATGATGAAGGAGATTTTAGAAGACAGTCTGCAATACGTGAGCGAAACACAGTGATGCCTGatcaatggtgggaatcttatggatgtggagcaccaaacctgcaaaaGAACCGAATGAGAAAGCAAAGTTATGATCCAATTTGTCTTGATGCATTTGAGGATCATTCGGAATGGATAATGGAAGATTCACCACCATTTTTAACTCCTGAAGAAGTTGATGCTTTACGGAATGATCTTGCAAATATGTCTCTTCAATCAGCTTTAGATGATTTGGGTATATTTTTGTTAGGGATGATTTTGTAA 2115 0.3981 MPVAPSLALISNPRPLSRAVYFPVLNPPKVRGLSIECARVGGVKITNNKRIEFSLQYIHGISVLCDAEVALIVFSTTGKLFEYSSDPWFKEQQEYEGWKCSSSCFSKSIFIEYGLNQNEEARTELRAVDAWILTDKPYSNQSIHSELLNLEKIREYRVVIPPNLPSVQNFEHKPKRSFYLKHYHHLQKYIASTLQQLIAKNWCVRLLDIHSNFVELKEFFQEKQMENYKHQQLIKKIIEEQEQETKNKKNQEQQGGYSVEERTTVGGGRATATAKAVDIAPRLTSFLEKDESFLTPWSWDSNSSSSSLNQQGRKSHHQFQPGSFFVRESSAPLTTAKKHVHGLSKIQHSSCLLIAYYLLVHWSSVVSRQSPPPVSLFSARPSIPPESRGGGINRVKHHLAGKGGYIEACRKVPAVVRHQFNQNIEDLRTKKRKTQEEYAESYGACDDVEREFDEIERNEMRQQQASRIPAPSSRKGVGKQLKGLQSFFPLAATPGTQPNSEDRAAMGFLYQAMYKAREDMVKRFQKRKRVVEPYLKILDSRWDSQLKRNLHAAGYWLNPAFRFNSAEFDKHKETISGLLDVIERYAYGDADLNTKLTSEKRIFKNDEGDFRRQSAIRERNTVMPDQWWESYGCGAPNLQKNRMRKQSYDPICLDAFEDHSEWIMEDSPPFLTPEEVDALRNDLANMSLQSALDDLGIFLLGMIL 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00867 704 MobiDBLite consensus disorder prediction 245 266 - -
Aip07g00867 704 Coils Coil 234 254 - -
Aip07g00867 704 Gene3D - 44 108 IPR036879 GO:0003677|GO:0046983
Aip07g00867 704 PANTHER OSJNBA0013A04.12 PROTEIN 388 455 - -
Aip07g00867 704 PANTHER OSJNBA0013A04.12 PROTEIN 501 645 - -
Aip07g00867 704 SUPERFAMILY Ribonuclease H-like 500 640 IPR012337 -
Aip07g00867 704 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 83 IPR002100 GO:0003677|GO:0046983
Aip07g00867 704 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 388 455 - -
Aip07g00867 704 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 501 645 - -
Aip07g00867 704 SMART madsneu2 40 86 IPR002100 GO:0003677|GO:0046983
Aip07g00867 704 Coils Coil 445 465 - -
Aip07g00867 704 Coils Coil 417 437 - -
Aip07g00867 704 ProSiteProfiles MADS-box domain profile. 44 87 IPR002100 GO:0003677|GO:0046983
Aip07g00867 704 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Aip07g00867 704 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Aip07g00867 704 SUPERFAMILY SRF-like 58 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00867 Aip-Chr7 10120086 10133554 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00867 35 109 MADS-box Gene Family AT5G13790 39.744 7.76e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip07g00867 SRF-TF 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00867 - - ahf:112762783 375.17