Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00852 ATGGAGAATGGTGGTGAAATGATCAAGAAAACTAAAGGTAGACAAAAGCGAGAGATAAAGAGGATTGAGAATAAAAAAAATTGTCAAATCGCTTTTACAAAGAGAAAAGACGGTTTACTGAAAAAGGCGAATGAAATAAAATCTTTATGTGATGCTGGTGTTGATTTGATCATATATTCTTCAAGTGGAAAAGCCTATTACTATGGCGATTCTTCATTAAAGACAATAAAAATGGCTCTCTCAAACGAACAACAACCTCAAGGTAGTAATCAGCTCCTTGGTTATATCATGGAGGAAATGTCTAGGAAGGACATGCAGAATCTCGTTAAAAAGAACGATTCACTTGTGGATCGATTAAATGCTGAGAAAGAACGAGCTGAAACTCTTTCTAACATTTTAAAGACAATTAAAACTGACAACAGCACCACCAACTGGTGGGATATGATTGGTCAAAGTTGTGGCAAAAATAAAGAGATGGAAAAAATTCTTGTAGCTCTCCAGCAGACTTTGAAAAATCAAATTTCACTCAAAATTGTTGCAAATCAGGCTACAGTTACGACTGCAGCTAAGAGTGTGGTACCTACATTTTATCGCAGTGATCAAACCATGATTCAAGTTAATTCTGGAGTTATTGGACCATACCCTACTCATGGAAGTATGAGTACTTTTTCCAACATTGCCTTTGCTACTGGTGTCAACCCTTTTGACGCTACGAGAGGATTTGGTAACCAGAATACCCCTGTTTGGTATCCATCATACCAACACCAACAAAGATATAATGATCTATTTCTCTATGATGCAAGTAACAGGAATGGTGTTGGGAGAAGCAGTGGCGGCGACGACACTGAAAATTATCTCTACCATTCAAATTATAACTATAACAATGGTAGAGGCTTTTTTGGTTTTCCATACCACAATAATCCTTTTAACAATGGTTATGGCCGCGGAGGATTCTTCTAA 960 0.3708 MENGGEMIKKTKGRQKREIKRIENKKNCQIAFTKRKDGLLKKANEIKSLCDAGVDLIIYSSSGKAYYYGDSSLKTIKMALSNEQQPQGSNQLLGYIMEEMSRKDMQNLVKKNDSLVDRLNAEKERAETLSNILKTIKTDNSTTNWWDMIGQSCGKNKEMEKILVALQQTLKNQISLKIVANQATVTTAAKSVVPTFYRSDQTMIQVNSGVIGPYPTHGSMSTFSNIAFATGVNPFDATRGFGNQNTPVWYPSYQHQQRYNDLFLYDASNRNGVGRSSGGDDTENYLYHSNYNYNNGRGFFGFPYHNNPFNNGYGRGGFF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00852 319 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 159 - -
Aip07g00852 319 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Aip07g00852 319 SUPERFAMILY SRF-like 13 77 IPR036879 GO:0003677|GO:0046983
Aip07g00852 319 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Aip07g00852 319 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Aip07g00852 319 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Aip07g00852 319 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Aip07g00852 319 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Aip07g00852 319 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Aip07g00852 319 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00852 Aip-Chr7 9790869 9792458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00852 7 147 Type I MADS-box Gene Family AT5G60440 30.070 1.25e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip07g00852 SRF-TF 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00852 - K09264 ahf:112762769 625.935