Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00839 ATGTGCAGTGGTTCAAAAAGTAAGCTTTCTCCCTCGGACGAAGTCATGGAAGGTGAGTTTCAGAAGCAGAATCAGGATGGTGTCCATAACTTCTCAGCTTTGCTTGAGCTGTCTGCATCCGATGATTTCGAAGCTTTCAGAAGAGAAGTTGAAGAGAAGGGTTGTGATGTAAACGACGCAGGCTTTTGGTATGGGAGAAGAATCGGATCAAAGAAGATGGGTTTCGAGAAGAGGACCCCTCTCATGATTGCTTCACTGTTTGGAAGCACCAGGGTGCTGAAGTATATTATCGAGACAGGCATGGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCAACGGCTCTCCACTGTGCTGTTGCTGGGGGCTCTGAATCCTCCCTCGAGATCGTCAAGCTCTTGCTCGATGCCCATGCTGATGCCGATTGCGTTGATGCTAGTGGTAATAAGCCTGTTAATCTGATTGCTCCTGCCTTCAATTCTTTGTCAAGTTCAAGGAGGAAGGCCATAGAGTTGTTTCTAAGAGGTGGGGAAAGAGATCAGCTTTTCAACCAGGAGATGGAGCAACAGATGCTCTCTTCTCTCTCGTTGAAAGAAGGATTGGAGAAAAAGGAAGGAACTGATAAGAAAGAATATCCTGTTGATGTTTCGTTGCCGGACATAAACAATGGTGTCTATGGAACTGACGAGTTCAGGATGTACAGCTTCAAGGTGAAGCCATGCTCAAGGGCTTATTCCCATGATTGGACTGAGTGCCCATTTGTTCATCCAGGGGAGAACGCAAGGAGGAGAGACCCACGCAAGTACCCTTACAGCTGTGTTCCCTGCCCAGAATTCCGCAAAGGGTCCTGCCAGAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCCTGGCTTCACCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAGACTGGCTGCAGCAGAAAAGTCTGCTTCTTTGCTCACAAACCCGAGGAGTTGCGTCCTGTGTATGCTTCCACTGGCTCAGCTATGCCTTCGCCAAAATCTTACTCAGCTAGTGGACTTGACATGACGGCGATGAGTCCTCTTTCGCTTAGTTCCTCATCGTTGCCTATGCCAACCGTTTCAACACCACCCATGTCACCCTTGGCAGCTTCTTCATCTCCCAAGAGTGGAAGCTTGTGGGCAAACAAAATAAACCTTACCCCACCATCATTGCAGCTCCCTGGCAGTCGCTTGAAGACTGCTTTGAGTGCCAGGGATTTCGATATGGAGATGGAACTGCTTGGTCTAGACAGCCCTGCTCGTCAACAGCAGCAGCAGCAACAACTAATTGAGGAGATTGCAAGGATATCTTCTCCATCTTTCAGGAGCAGGATTGGTGATTTAAATCCTACTAACCTTGATGACCTATTAGCAGCTGCTGACCCTTCTCTCTTGTCTCAATTGCATGGAATCTCTGCTCAACCTTCAACTCCTACGCAATTGCAATCGTCGATGCGCCAAAACATGAACAACATGAACCATCTTCGGGCAAGTTATCCATCCAATGTCACTTCCTCACCGGTGAGGAAACCTTCTGCTTTTGGGTTTGACTCTTCAGCTGCTGTGGCAGCTGCAGTGATGAATTCAAGGTCTGCTGCCTTTGCAAAGCGAAGCCAAAGCTTCATTGATCGCAGTGCTGCAAACCACCACATTGGGCTGTCTTCGCCCTCCAACCCCAGCTGCAGGGTCTCCTCTGGCCTTTCAGATTGGAATTCCCCATCTGGGAAGCTTGATTGGGGTGTGAATGGAGATGAACTGAATAAGCTGAGGAAATCAGCTTCTTTTGGATTCAGAAACAATGGGGCAGCAACTGCCTCCCCTTTGGCACAGTCAGAACATGTTGAGCCAGATGTCTCATGGGTTCATTCATTGGTTCCTTCTGAAAGTTCTGAGATATTTGGTGCTGAGAAGAAGCAGCAGTTTGATCTCAGTAAAGAAAGGCTTCCACCATGGGTGGAGCAGTTGTATATAGAGCAGGAGCAGATGGTAGCATAA 2034 0.4823 MCSGSKSKLSPSDEVMEGEFQKQNQDGVHNFSALLELSASDDFEAFRREVEEKGCDVNDAGFWYGRRIGSKKMGFEKRTPLMIASLFGSTRVLKYIIETGMVDVNRACGSDRATALHCAVAGGSESSLEIVKLLLDAHADADCVDASGNKPVNLIAPAFNSLSSSRRKAIELFLRGGERDQLFNQEMEQQMLSSLSLKEGLEKKEGTDKKEYPVDVSLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLSLSSSSLPMPTVSTPPMSPLAASSSPKSGSLWANKINLTPPSLQLPGSRLKTALSARDFDMEMELLGLDSPARQQQQQQQLIEEIARISSPSFRSRIGDLNPTNLDDLLAAADPSLLSQLHGISAQPSTPTQLQSSMRQNMNNMNHLRASYPSNVTSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRSAANHHIGLSSPSNPSCRVSSGLSDWNSPSGKLDWGVNGDELNKLRKSASFGFRNNGAATASPLAQSEHVEPDVSWVHSLVPSESSEIFGAEKKQQFDLSKERLPPWVEQLYIEQEQMVA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00839 677 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Aip07g00839 677 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Aip07g00839 677 MobiDBLite consensus disorder prediction 1 20 - -
Aip07g00839 677 Gene3D - 8 207 IPR036770 -
Aip07g00839 677 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 676 - -
Aip07g00839 677 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Aip07g00839 677 PANTHER UNKEMPT FAMILY MEMBER 19 676 IPR045234 -
Aip07g00839 677 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Aip07g00839 677 Pfam Ankyrin repeats (3 copies) 53 142 IPR002110 GO:0005515
Aip07g00839 677 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Aip07g00839 677 SUPERFAMILY Ankyrin repeat 28 153 IPR036770 -
Aip07g00839 677 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Aip07g00839 677 SMART ANK_2a 76 106 IPR002110 GO:0005515
Aip07g00839 677 SMART ANK_2a 111 143 IPR002110 GO:0005515
Aip07g00839 677 Gene3D - 272 333 - -
Aip07g00839 677 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00839 Aip-Chr7 9454510 9457745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00839 29 643 C2H2 Transcription Factor Family AT5G12850 41.641 6.01e-148 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip07g00839 Ank_2 4.7e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00839 - - gmx:100783376 1008.82