Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00827 ATGGAAATTTCTAACCCTAACGATCCCCAAGAAACCAAACCCACCGCCACCACCGCCCCTATCCCCACTCTTTCTCAAACACCTAACACCAGCAGCAGCAGCAGTGATAATAATAACCCCCCTCACAATAATAACCGCAAGTGCAAGGGAAAAGGTGGACCTGACAACAACAAGTTTCGTTACCGCGGCGTCAGGCAGCGGAGCTGGGGGAAATGGGTGGCGGAGATAAGAGAACCGCGCAAGCGGACCAGGAAGTGGCTCGGAACATTCGCCACCGCCGAAGATGCCGCCAGGGCCTATGACCGTGCTGCTTTGATCCTCTACGGTTCTAGGGCACAGTTGAATCTGCAACCCTCAGTTTCCGTCAATTCTAACTCTTCTAATTCTTCGTCTCGTGGCGGTTCTTCTTCTTCTTCTTCTTCCTCCACTCAAACGCTTAGGCCTTTGCTTCCTCGCCCTTCCGGGTTCACCTTCTCATCCGGTTCCCGGTTTCCCGTTGTGTTTAACGGCCTCCACAATAACAATAATAATAATAACTTCTCTGCTGCTACCGCCTCGGGTTTCGTGCCATTTGGGGTTTTCCCTTTTAGTAACGGTAATAATAACAGTGTTGTTGCACCACCACCGGTGCAGTTTCATCATCAGTATTCACCACAAGTGCTGCAAATTCAGCAGCAGCAGCAGCTTCAGCAGCAACAACAACAGTGTCACCATCGTCACCAAAAAGCCGATGAATCAGGTGGAACAACTTCAATTAGGTTAACCTCGCATCAGAATAATAATAATAATACTACTAATCATCCTTCGGGTTATGTTCATCGTCCTCATCAAGAGAGTTGCATGGTTATGGAAGAAGAAGTATTGAATTATAGTAATAATAATAACAATCTCGCTGTGGATTCAACATTGTCTTCCTCAGAGGTTGGAGCAGATGCAGTGGTGGATCCAGATCCGGATCCGGAACCGGGTATCGGATCTATGTGGTCTTCGTTGACGGAGGAGGATTATCCAGTTAGCTTGTGGGATTACAATTACAATGATCCATACTTTTGTTTGAATTTTGAAGAAATTTGA 1074 0.4702 MEISNPNDPQETKPTATTAPIPTLSQTPNTSSSSSDNNNPPHNNNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAQLNLQPSVSVNSNSSNSSSRGGSSSSSSSSTQTLRPLLPRPSGFTFSSGSRFPVVFNGLHNNNNNNNFSAATASGFVPFGVFPFSNGNNNSVVAPPPVQFHHQYSPQVLQIQQQQQLQQQQQQCHHRHQKADESGGTTSIRLTSHQNNNNNTTNHPSGYVHRPHQESCMVMEEEVLNYSNNNNNLAVDSTLSSSEVGADAVVDPDPDPEPGIGSMWSSLTEEDYPVSLWDYNYNDPYFCLNFEEI 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00827 357 CDD AP2 60 117 IPR001471 GO:0003700|GO:0006355
Aip07g00827 357 MobiDBLite consensus disorder prediction 119 154 - -
Aip07g00827 357 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Aip07g00827 357 Pfam AP2 domain 60 109 IPR001471 GO:0003700|GO:0006355
Aip07g00827 357 MobiDBLite consensus disorder prediction 232 274 - -
Aip07g00827 357 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Aip07g00827 357 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Aip07g00827 357 MobiDBLite consensus disorder prediction 48 62 - -
Aip07g00827 357 MobiDBLite consensus disorder prediction 1 45 - -
Aip07g00827 357 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 351 - -
Aip07g00827 357 MobiDBLite consensus disorder prediction 1 63 - -
Aip07g00827 357 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Aip07g00827 357 MobiDBLite consensus disorder prediction 247 272 - -
Aip07g00827 357 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Aip07g00827 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 10 351 - -
Aip07g00827 357 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00827 Aip-Chr7 9154367 9155879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00827 46 195 AP2-EREBP Transcription Factor Family AT2G40220 67.742 1.68e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip07g00827 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00827 K09286 - gmx:100301892 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00827 07 9154367 9155879 Aip07g00827 07 9154367 9155879 ECH