Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00808 ATGATAGAACTGGTCGTGATGGATGAAATGGGAGATCATATTCAATGTACCATAAGGAATCCTCTTGGGAGACTATTTGAGGGTGACTTATCTGATGGCAAAGTATACACAATATCCAACTTTTCATTGTCACTGAATGATCAGAAGTACAAACCAACAACTCATTCTCATCGTATATATTTTAAGAGAGAAACTCAGCTTAGGATTATTCATGAGCTTGGCTTCATTGATCATAGTTTCCATTTCGTATCTAATGAACTGATACTCAAGCATTCCAACCCTCAGTCCCACTTAATTGATGTTATTGGCTTGATTACTGGGAATGGTGACACGATTGAGTTTACAAGGAATGGCAAGAGTTGTGTATACATTGTGGTTGAACTTGATGATATGAAGGGTAATGGTAAAATTAGGTGTACTCTGTGGGAAGAGTATGCAAAGATGTTAGTTAAGCATATTGAGGATCAACCCACATATGAGTATATAATAATAATTCAATTTGCAAAGTTCAATCTCTTCAAGGGCTCAATGGGTGTATCTAATACAAATTGCAACTCCATTTTGTACATCAACGCTGACTTTCCAGAGGTGAAGGATTTTAGAAAGAGTGTTATAATGGTTGGGGTTCCACCTGCAAACCAGCTGTCTCAATTATTTGATAGACCATCATACTCTCTTGAGGATGATCTTATTAACCAAACAAGTTTCAAGAACATATGTGATCTTAAGGAATCCTCTGAGATTTGA 747 0.3655 MIELVVMDEMGDHIQCTIRNPLGRLFEGDLSDGKVYTISNFSLSLNDQKYKPTTHSHRIYFKRETQLRIIHELGFIDHSFHFVSNELILKHSNPQSHLIDVIGLITGNGDTIEFTRNGKSCVYIVVELDDMKGNGKIRCTLWEEYAKMLVKHIEDQPTYEYIIIIQFAKFNLFKGSMGVSNTNCNSILYINADFPEVKDFRKSVIMVGVPPANQLSQLFDRPSYSLEDDLINQTSFKNICDLKESSEI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00808 248 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 2 247 - -
Aip07g00808 248 Gene3D - 1 72 IPR012340 -
Aip07g00808 248 CDD RPA1_DBD_B_like 100 205 - -
Aip07g00808 248 CDD RPA1_DBD_A_like 2 65 - -
Aip07g00808 248 PANTHER REPLICATION FACTOR A 1, RFA1 2 247 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip07g00808 248 Gene3D - 76 208 IPR012340 -
Aip07g00808 248 SUPERFAMILY Nucleic acid-binding proteins 2 73 IPR012340 -
Aip07g00808 248 SUPERFAMILY Nucleic acid-binding proteins 94 204 IPR012340 -
Aip07g00808 248 Pfam Domain of unknown function DUF223 3 70 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00808 Aip-Chr7 8849961 8851159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00808 6 201 Core DNA Replication Machinery Family AT5G08020 25.743 1.05e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00808 - - aip:110264975 424.476